VIOLIN Logo
VO Banner
Search: for Help
Protegen Home
Introduction
Statistics
News and Updates
Protegen Query
Protegen BLAST
Selected Bacteria
Brucella spp. (26)
B. anthracis (14)
E. coli (40)
M. tuberculosis (26)
N. meningitidis (18)
Selected Viruses
Ebola virus (19)
HIV (41)
Influenza virus (50)
Selected Parasites
Plasmodium (47)
Data Submission
Data Exchange
Data Download
Documentation
FAQs
Disclaimer
Contact Us
UMMS Logo


A34R

General Information
Protegen ID 1400
Sequence Strain (Species/Organism) Vaccinia virus
Taxonomy ID 10245
Molecule Role Protective antigen
References  
Gene Information
Gene Name A34R
NCBI Gene ID 3707687
Genbank Accession A19583
Locus Tag VACWR157
Gene Starting Position 143911
Gene Ending Position 144417
DNA Sequence 
>NC_006998.1:143911-144417 Vaccinia virus, complete genome
AATGAAATCGCTTAATAGACAAACTGTAAGTAGGTTTAAGAAGTTGTCGGTGCCGGCCGCTATAATGATG
ATACTCTCAACCATTATTAGTGGCATAGGAACATTTCTGCATTACAAAGAAGAACTGATGCCTAGTGCTT
GCGCCAATGGATGGATACAATACGATAAACATTGTTATTTAGATACTAACATTAAAATGTCTACAGATAA
TGCGGTTTATCAGTGTCGTAAATTACGAGCCAGATTGCCTAGACCGGATACTAGACATCTGAGAGTATTG
TTTAGTATTTTTTATAAAGATTATTGGGTAAGTTTAAAAAAGACCAATGATAAATGGTTAGATATTAATA
ATGATAAAGATATAGATATTAGTAAATTAACAAATTTTAAACAACTAAACAGTACGACGGATGCTGAAGC
GTGTTATATATACAAGTCTGGAAAACTGGTTAAAACAGTATGTAAAAGTACTCAATCTGTACTATGTGTT
AAAAAATTCTACAAGTG
Protein Information
Protein Name IEV and EEV membrane glycoprotein
NCBI Protein GI 66275954
Protein Accession YP_233039
Protein pI 10.11
Protein Weight 18661.31
Protein Length 168
Protein Note IEV and EEV membrane glycoprotein; similar to vaccinia virus strain Copenhagen A34R; C-type lectin-like protein found on extracellular enveloped virions (EEV); The poxviridae are enveloped unsegmented dsDNA viruses; unlike many dsDNA viruses that replicate in the host nucleus poxviruses encode their own replication machinery and therefore replicate in the cytoplasm; viral genes are expressed in a bi-phasic manner with early genes encoding non-structural proteins involved in genome replication and late genes encoding the viral structural proteins;
Protein Sequence 
>YP_233039.1 EEV glycoprotein [Vaccinia virus]
MKSLNRQTVSRFKKLSVPAAIMMILSTIISGIGTFLHYKEELMPSACANGWIQYDKHCYLDTNIKMSTDN
AVYQCRKLRARLPRPDTRHLRVLFSIFYKDYWVSLKKTNDKWLDINNDKDIDISKLTNFKQLNSTTDAEA
CYIYKSGKLVKTVCKSTQSVLCVKKFYK
Vaxign Prediction
Localization(Probability)
(Prob.=0)
Adhesin Probability 0.598
Trans-membrane Helices 1
Detailed Vaxign Results Vaxign Results
Epitope Information
IEDB Linear Epitope