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Vaxpresso: Texpresso for vaccine research

Vaxpresso is a Textpresso-powered vaccine literature mining program. It contains all vaccine-related papers on selected pathogens extracted from PubMed. The natural language processing (NLP) and onolgy-based Textpresso is then used to process the literature data.

Keywords Species: All Anthrax,Bacillus anthracis Botulism,Clostridium botulinum toxin Plague,Yersinia pestis Smallpox,variola major Tularemia,Francisella tularensis Ebola virus Marburg virus Lassa virus Machupo virus Brucellosis,Brucella Clostridium perfringens Salmonella Escherichia coli Shigella Glanders,Burkholderia mallei Melioidosis,Burkholderia pseudomallei Psittacosis,Chlamydia psittaci Q fever,Coxiella burnetii Staphylococcal enterotoxin B Typhus fever,Rickettsia prowazekii Venezuelan equine encephalitis virus,VEE virus Eastern equine encephalitis virus,EEE virus Western equine encephalitis virus,WEE virus Vibrio cholerae Cryptosporidium parvum Nipah virus hantavirus Human immunodeficiency virus,HIV,acquired immunodeficiency syndrome,AIDS Mycobacterium tuberculosis,tuberculosis Plasmodium falciparum,Malaria Exact match Case sensitive		Categories action anatomy antioxidant activity (GO) association auxiliary transport protein activity (GO) binding (GO) biological adhesion (GO) biological process (GO) biological regulation (GO) catalytic activity (GO) cell (GO) cell part (GO) cellular component (GO) cellular process (GO) chaperone regulator activity (GO) characterization chemoattracant activity (GO) chemorepellant activity (GO) clone comparison consort descriptor developmental process (GO) developmental stage disease disease (H. sapiens) drugs effect energy transducer activity (GO) entity feature envelope (GO) enzyme regulator activity (GO) establishment of localization (GO) extracellular matrix (GO) extracellular matrix part (GO) extracellular region (GO) extracellular region part (GO) gene gene (H. sapiens) growth (GO) involvement life stages localization (GO) localization (Textpresso) locomotion (GO) maintenance of localization (GO) membrane enclosed lumen (GO) metabolic process (GO) method molecular function (GO) motor activity (GO) multi-organism process (GO) multicellular organismal process (GO) mutants none nucleic acid nutrient reservoir activity (GO) organelle (GO) organelle part (GO) organism pathway phenotype pigmentation (GO) protein complex (GO) protein tag (GO) purpose regulation reporter gene reproduction (GO) reproductive process (GO) response to stimulus (GO) restriction enzyme rhythmic process (GO) second messenger sequence (SO) sex signal transducer activity (GO) spatial relation strain structural molecule activity (GO) synapse (GO) synapse part (GO) time relation transcription regulator activity (GO) transgene translation regulator activity (GO) transporter activity (GO) transposon triplet codon amino acid adapter activity (GO) vaccine vector viral reproduction (GO) virion (GO) virion part (GO) action anatomy antioxidant activity (GO) association auxiliary transport protein activity (GO) binding (GO) biological adhesion (GO) biological process (GO) biological regulation (GO) catalytic activity (GO) cell (GO) cell part (GO) cellular component (GO) cellular process (GO) chaperone regulator activity (GO) characterization chemoattracant activity (GO) chemorepellant activity (GO) clone comparison consort descriptor developmental process (GO) developmental stage disease disease (H. sapiens) drugs effect energy transducer activity (GO) entity feature envelope (GO) enzyme regulator activity (GO) establishment of localization (GO) extracellular matrix (GO) extracellular matrix part (GO) extracellular region (GO) extracellular region part (GO) gene gene (H. sapiens) growth (GO) involvement life stages localization (GO) localization (Textpresso) locomotion (GO) maintenance of localization (GO) membrane enclosed lumen (GO) metabolic process (GO) method molecular function (GO) motor activity (GO) multi-organism process (GO) multicellular organismal process (GO) mutants none nucleic acid nutrient reservoir activity (GO) organelle (GO) organelle part (GO) organism pathway phenotype pigmentation (GO) protein complex (GO) protein tag (GO) purpose regulation reporter gene reproduction (GO) reproductive process (GO) response to stimulus (GO) restriction enzyme rhythmic process (GO) second messenger sequence (SO) sex signal transducer activity (GO) spatial relation strain structural molecule activity (GO) synapse (GO) synapse part (GO) time relation transcription regulator activity (GO) transgene translation regulator activity (GO) transporter activity (GO) transposon triplet codon amino acid adapter activity (GO) vaccine vector viral reproduction (GO) virion (GO) virion part (GO) action anatomy antioxidant activity (GO) association auxiliary transport protein activity (GO) binding (GO) biological adhesion (GO) biological process (GO) biological regulation (GO) catalytic activity (GO) cell (GO) cell part (GO) cellular component (GO) cellular process (GO) chaperone regulator activity (GO) characterization chemoattracant activity (GO) chemorepellant activity (GO) clone comparison consort descriptor developmental process (GO) developmental stage disease disease (H. sapiens) drugs effect energy transducer activity (GO) entity feature envelope (GO) enzyme regulator activity (GO) establishment of localization (GO) extracellular matrix (GO) extracellular matrix part (GO) extracellular region (GO) extracellular region part (GO) gene gene (H. sapiens) growth (GO) involvement life stages localization (GO) localization (Textpresso) locomotion (GO) maintenance of localization (GO) membrane enclosed lumen (GO) metabolic process (GO) method molecular function (GO) motor activity (GO) multi-organism process (GO) multicellular organismal process (GO) mutants none nucleic acid nutrient reservoir activity (GO) organelle (GO) organelle part (GO) organism pathway phenotype pigmentation (GO) protein complex (GO) protein tag (GO) purpose regulation reporter gene reproduction (GO) reproductive process (GO) response to stimulus (GO) restriction enzyme rhythmic process (GO) second messenger sequence (SO) sex signal transducer activity (GO) spatial relation strain structural molecule activity (GO) synapse (GO) synapse part (GO) time relation transcription regulator activity (GO) transgene translation regulator activity (GO) transporter activity (GO) transposon triplet codon amino acid adapter activity (GO) vaccine vector viral reproduction (GO) virion (GO) virion part (GO) action anatomy antioxidant activity (GO) association auxiliary transport protein activity (GO) binding (GO) biological adhesion (GO) biological process (GO) biological regulation (GO) catalytic activity (GO) cell (GO) cell part (GO) cellular component (GO) cellular process (GO) chaperone regulator activity (GO) characterization chemoattracant activity (GO) chemorepellant activity (GO) clone comparison consort descriptor developmental process (GO) developmental stage disease disease (H. sapiens) drugs effect energy transducer activity (GO) entity feature envelope (GO) enzyme regulator activity (GO) establishment of localization (GO) extracellular matrix (GO) extracellular matrix part (GO) extracellular region (GO) extracellular region part (GO) gene gene (H. sapiens) growth (GO) involvement life stages localization (GO) localization (Textpresso) locomotion (GO) maintenance of localization (GO) membrane enclosed lumen (GO) metabolic process (GO) method molecular function (GO) motor activity (GO) multi-organism process (GO) multicellular organismal process (GO) mutants none nucleic acid nutrient reservoir activity (GO) organelle (GO) organelle part (GO) organism pathway phenotype pigmentation (GO) protein complex (GO) protein tag (GO) purpose regulation reporter gene reproduction (GO) reproductive process (GO) response to stimulus (GO) restriction enzyme rhythmic process (GO) second messenger sequence (SO) sex signal transducer activity (GO) spatial relation strain structural molecule activity (GO) synapse (GO) synapse part (GO) time relation transcription regulator activity (GO) transgene translation regulator activity (GO) transporter activity (GO) transposon triplet codon amino acid adapter activity (GO) vaccine vector viral reproduction (GO) virion (GO) virion part (GO)	Literature curated literature vaccine literature	Fields abstract author body title year	Search Scope document field sentence Search Mode boolean latent themes vector (tf*idf) Sort by abstract accession author journal score (hits) title year

Database Statistics and Provenance Statistics: abstract: 24688, full text body: 286, title: 24688, all vaccine related articles Provenance: All literature data are originally obtained from PubMed.

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