VIOLIN: Vaccine Investigation and Online Information Network

vpr
Gene Name	vpr
Sequence Strain (Species/Organism)	Human immunodeficiency virus 1
NCBI Gene ID	155807
NCBI Protein GI	28872817
Locus Tag	HIV1gp4
Genbank Accession	AF033819
Protein Accession	NP_057852
Taxonomy ID	11676
Gene Starting Position	5104
Gene Ending Position	5395
Gene Strand (Orientation)	+
Protein Name	Vpr
Protein pI	8.54
Protein Weight	11024.76
Protein Length	96
Protein Note	An artificial frameshift eliminating the orf-disrupting nucleotide at position 5320 is introduced to obtain the typical HIV-1 Vpr protein sequence. For this particular HIV-1 strain, HXB2, only a short (78 amino acid long) variant of the Vpr sequence can be obtained by translation of nucleotides 5105 through 5341 without the frameshift
DNA Sequence	>gi\|9629357:5104-5395 Human immunodeficiency virus 1, complete genome GATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTA GAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCT ATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTAT CCATTTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGC CAGTAGATCCTA
Protein Sequence	>gi\|28872817\|ref\|NP_057852.2\| Vpr [Human immunodeficiency virus 1] MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFI HFRIGCRHSRIGVTRQRRARNGASRS
Molecule Role	Other
Related Vaccines(s)	HIV DNA vaccine SHIV-89.6 DNA (DNA/89.6)
References