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VP6

Gene Name VP6
Sequence Strain (Species/Organism) Rotavirus A
VO ID VO_0011257
NCBI Gene ID 7011372
NCBI Protein GI 210136699
Locus Tag RVA_s6gp1
Genbank Accession DQ838646
Protein Accession YP_002302229
Taxonomy ID 28875
Segment No 6
Gene Starting Position 23
Gene Ending Position 1216
Gene Strand (Orientation) +
Protein Name VP6
Protein pI 6.05
Protein Weight 42193.23
Protein Length 397
DNA Sequence 
>NC_011509.2:23-1216 Rotavirus A segment 6, complete genome
CATGGATGTCCTATACTCTTTGTCAAAGACTCTTAAAGACGCTAGAGACAAAATTGTCGAAGGCACATTG
TATTCTAACGTGAGTGATCTAATTCAACAATTTAATCAAATGATAATTACTATGAATGGAAATGAATTTC
AAACTGGAGGAATCGGTAATTTGCCAATTAGAAACTGGAATTTTAATTTCGGGTTACTTGGAACAACTTT
GCTGAACTTAGACGCTAATTATGTTGAAACGGCAAGAAATACAATTGATTATTTCGTGGATTTTGTAGAC
AATGTATGCATGGATGAGATGGTTAGAGAATCACAAAGGAACGGAATTGCACCTCAATCAGACTCGCTAA
GAAAGCTGTCAGCCATTAAATTCAAAAGAATAAATTTTGATAATTCGTCGGAATACATAGAAAACTGGAA
TTTGCAAAATAGAAGACAGAGGACAGGTTTCACTTTTCATAAACCAAACATTTTTCCTTATTCAGCATCA
TTTACACTAAATAGATCACAACCCGCTCATGATAATTTGATGGGCACAATGTGGTTAAACGCAGGATCGG
AAATTCAAGTCGCTGGATTTGACTACTCATGTGCTATTAACGCACCAGCCAATATACAACAATTTGAGCA
TATTGTGCCACTCCGAAGAGTGTTAACTACAGCTACGATAACTCTTCTACCAGACGCGGAAAGGTTTAGT
TTTCCAAGAGTGATCAATTCAGCTGACGGGGCAACTACATGGTTTTTCAACCCAGTGATTCTCAGGCCGA
ATAACGTTGAAGTGGAGTTTCTATTGAATGGACAGATAATAAACACTTATCAAGCAAGATTTGGAACTAT
CGTAGCTAGAAATTTTGATACTATTAGACTATCATTCCAGTTAATGAGACCACCAAACATGACACCAGCA
GTAGCAGTACTATTCCCGAATGCACAGCCATTCGAACATCATGCAACAGTGGGATTGACACTTAGAATTG
AGTCTGCAGTTTGTGAGTCTGTACTCGCCGATGCAAGTGAAACTCTATTAGCAAATGTAACATCCGTTAG
GCAAGAGTACGCAATACCAGTTGGACCAGTCTTTCCACCAGGTATGAACTGGACTGATTTAATCACCAAT
TATTCACCGTCTAGGGAGGACAATTTGCAACGCGTATTTACAGTGGCTTCCATTAGAAGCATGCTCATTA
AATG
Protein Sequence 
>YP_002302229.1 VP6 [Rotavirus A]
MDVLYSLSKTLKDARDKIVEGTLYSNVSDLIQQFNQMIITMNGNEFQTGGIGNLPIRNWNFNFGLLGTTL
LNLDANYVETARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLRKLSAIKFKRINFDNSSEYIENWN
LQNRRQRTGFTFHKPNIFPYSASFTLNRSQPAHDNLMGTMWLNAGSEIQVAGFDYSCAINAPANIQQFEH
IVPLRRVLTTATITLLPDAERFSFPRVINSADGATTWFFNPVILRPNNVEVEFLLNGQIINTYQARFGTI
VARNFDTIRLSFQLMRPPNMTPAVAVLFPNAQPFEHHATVGLTLRIESAVCESVLADASETLLANVTSVR
QEYAIPVGPVFPPGMNWTDLITNYSPSREDNLQRVFTVASIRSMLIK
Molecule Role Protective antigen
Molecule Role Annotation VP6 derived from Group A rotavirus conferred in vivo partial protection against rotavirus challenge in a neonatal mouse model (Garaicoechea et al., 2008).
References