Vaxign: Vaccine Design

Vaxign: Vaccine Target Prediction and Design

Query ID	Submitted at	Status
3ZQDVTFEWV	2010-05-17 16:22:40	All steps finished at: 2010-05-18 00:26:02

Found 3136 protein(s).

Record: 1 to 50 of 3136 Records.

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#	Sequence ID	Gene Symbol	Protein Note	Localization (Probability)	Adhesin Probability	Trans-membrane helices	MHC I Binding	MHC II Binding	Similar Human Protein	Similar Mouse Protein
1	gi\|225851547\|ref\|YP_002731780.1\|	dnaA	chromosomal replication initiator protein DnaA	Cytoplasmic (Prob.=0.997)	0.077	0	MTPRSLPEI binds to Mamu-A01 More...*	SAAATGAVL binds to H-2-IAg7 More...
2	gi\|225851548\|ref\|YP_002731781.1\|	dnaN	DNA polymerase III subunit beta	Unknown (Prob.=0.2)	0.092	0	YLNGIFFHA binds to HLA-A0201 More...*	DIGFNSKYL binds to HLA-DRB11302 More...*
3	gi\|225851549\|ref\|YP_002731782.1\|	recF	DNA replication and repair protein RecF	Cytoplasmic (Prob.=0.896)	0.196	0	DGPHRTDLI binds to H-2-Dd More...	RAAYDDVAR binds to H-2-IEg7 More...
4	gi\|225851550\|ref\|YP_002731783.1\|	BMEA_A0004	UBA/THIF-type NAD/FAD binding protein	Unknown (Prob.=0.2)	0.144	0	ERYARHIVL binds to HLA-B1402 More...*	AHNAEALIA binds to H-2-IAg7 More...	YES	YES
5	gi\|225851551\|ref\|YP_002731784.1\|	BMEA_A0005	D-isomer specific 2-hydroxyacid dehydrogenase	Cytoplasmic (Prob.=0.926)	0.146	0	RKQQQNHVW binds to Mamu-B17 More...*	YRKQQQNHV binds to Mamu-DRBw201 More...*	YES	YES
6	gi\|225851552\|ref\|YP_002731785.1\|	BMEA_A0006	ABC transporter-like protein	Unknown (This protein may have multiple localization sites.) (Prob.=0.576)	0.067	0	VLLSVRDLSV binds to HLA-A2.1 More...	HPYTKHLLA binds to H-2-IAd More...	YES	YES
7	gi\|225851553\|ref\|YP_002731786.1\|	BMEA_A0007	binding-protein-dependent transport systems inner membrane protein	Cytoplasmic Membrane (Prob.=1)	0.231	6	SLWIFLFLL binds to HLA-A0201 More...*	GKNNLQAPW binds to H-2-IEd More...
8	gi\|225851554\|ref\|YP_002731787.1\|	BMEA_A0008	hypothetical protein BMEA_A0008	Cytoplasmic Membrane (Prob.=1)	0.167	6	ISAFFTGSLL binds to Patr-B0101 More...*	ISLGLWLTF binds to H-2-IAs More...
9	gi\|225851555\|ref\|YP_002731788.1\|	BMEA_A0009	extracellular solute-binding protein family 5	Unknown (Prob.=0.25)	0.226	0	YNPFAQKL binds to H-2-Kd More...	RHGHFHDHD binds to HLA-DQA10301/DQB10 More...
10	gi\|225851556\|ref\|YP_002731789.1\|	BMEA_A0010	extracellular solute-binding protein family 5	Unknown (Prob.=0.25)	0.439	0	DPKVREAL binds to HLA-B8 More...	HAVGRMQGY binds to H-2-IAs More...
11	gi\|225851557\|ref\|YP_002731790.1\|	BMEA_A0011	hypothetical protein BMEA_A0011	Unknown (Prob.=0.2)	0.491	0	YSRFHLEFSL binds to Patr-B0101 More...*	QQIGIYSRF binds to HLA-DRB10301 More...*
12	gi\|225851558\|ref\|YP_002731791.1\|	BMEA_A0012	hypothetical protein BMEA_A0012	Cytoplasmic (Prob.=0.896)	0.255	0	LMQECLIEVW binds to Mamu-B17 More...*	PELAATQMA binds to HLA-DPB10401 More...*
13	gi\|225851559\|ref\|YP_002731792.1\|	BMEA_A0013	hypothetical protein BMEA_A0013	Unknown (Prob.=0.2)	0.068	0	LLHKYFTFI binds to HLA-A0201 More...*	YFQMVRAKP binds to HLA-DRB11101 More...*
14	gi\|225851560\|ref\|YP_002731793.1\|	BMEA_A0014	extracellular ligand-binding receptor	Periplasmic (Prob.=0.976)	0.604	1	AAKDAIQAL binds to HLA-B1402 More...*	WAIGGTNAQ binds to HLA-DRB10401 More...*
15	gi\|225851561\|ref\|YP_002731794.1\|	BMEA_A0016	hypothetical protein BMEA_A0016	Unknown (Prob.=0.2)	0.402	0	APSTRNYNE binds to Patr-B1301 More...*	ENHHFRLGL binds to HLA-DRB11501 More...*
16	gi\|225851562\|ref\|YP_002731795.1\|	BMEA_A0017	hydroxymethylglutaryl-CoA lyase	Cytoplasmic (Prob.=0.896)	0.146	0	VSPKWVPQL binds to Mamu-A01 More...*	PKWVPQLAD binds to HLA-DR7 More...	YES	YES
17	gi\|225851563\|ref\|YP_002731796.1\|	BMEA_A0018	carbamoyl-phosphate synthase subunit L	Cytoplasmic (Prob.=0.896)	0.077	0	FLSENPAFV binds to HLA-A2 More...	GGGGKGMRR binds to HLA-DRB11301 More...*	YES	YES
18	gi\|225851564\|ref\|YP_002731797.1\|	BMEA_A0019	propionyl-CoA carboxylase	Cytoplasmic Membrane (Prob.=0.946)	0.141	0	GGPAPAAGF binds to H-2-Dd More...	TWSAEEEAE binds to H-2-IEg7 More...	YES	YES
19	gi\|225851565\|ref\|YP_002731798.1\|	BMEA_A0020	isovaleryl-CoA dehydrogenase	Unknown (Prob.=0.2)	0.191	0	RRMLIGREL binds to HLA-B27 More...	MGYLAHCIA binds to H-2-IEk More...	YES	YES
20	gi\|225851566\|ref\|YP_002731799.1\|	BMEA_A0022	CHRD domain-containing protein	Unknown (Prob.=0.25)	0.410	1	MKYRFILL binds to H-2-Kb More...	YHTKAHPGG binds to HLA-DQA10301/DQB10 More...
21	gi\|225851567\|ref\|YP_002731800.1\|	BMEA_A0023	acyltransferase MdmB	Cytoplasmic Membrane (Prob.=1)	0.159	10	FLYCCTYLL binds to HLA-A0201 More...*	WWDGLTQLL binds to HLA-DRB10401 More...*
22	gi\|225851568\|ref\|YP_002731801.1\|	BMEA_A0025	hypothetical protein BMEA_A0025	Cytoplasmic (Prob.=0.896)	0.317	0	AEEEELDTA binds to Patr-B2401 More...*	GILGGGVGG binds to H-2-IAs More...
23	gi\|225851569\|ref\|YP_002731802.1\|	aroA	3-phosphoshikimate 1-carboxyvinyltransferase	Unknown (Prob.=0.2)	0.210	0	LLAGLNTPGV binds to HLA-A2 More...	SKRPMGRVL binds to HLA-DR1 More...
24	gi\|225851570\|ref\|YP_002731803.1\|	cmk	cytidylate kinase	Cytoplasmic (Prob.=0.896)	0.222	0	MPHLDTGLTY binds to HLA-B3501 More...*	SIEAAFLAA binds to H-2-IEk More...
25	gi\|225851571\|ref\|YP_002731804.1\|	rpsA	30S ribosomal protein S1	Cytoplasmic (Prob.=0.896)	0.063	0	GEVVKAVVL binds to HLA-B4001 More...*	LDNPWTTFA binds to HLA-DPB10401 More...*	YES
26	gi\|225851572\|ref\|YP_002731805.1\|	BMEA_A0029	hypothetical protein BMEA_A0029	Cytoplasmic Membrane (Prob.=1)	0.347	11	AWLEALVIAI binds to Patr-A0901 More...*	TYSKIQNIL binds to HLA-DR4 More...
27	gi\|225851573\|ref\|YP_002731806.1\|	BMEA_A0030	LysR family transcriptional regulator	Cytoplasmic (Prob.=0.997)	0.249	0	MLMHNDRYK binds to HLA-A0301 More...*	LGGGKRGFL binds to HLA-DRB11301 More...*
28	gi\|225851574\|ref\|YP_002731807.1\|	BMEA_A0031	lytic murein transglycosylase	Cytoplasmic Membrane (Prob.=0.86)	0.322	1	YRHWLETDIW binds to Mamu-B17 More...*	GAPGKYFNT binds to HLA-DRB11501 More...*
29	gi\|225851575\|ref\|YP_002731808.1\|	recR	recombination protein RecR	Cytoplasmic (Prob.=0.896)	0.164	0	LIKKKEAL binds to HLA-B8 More...	TICTDERRD binds to H-2-IEg7 More...
30	gi\|225851576\|ref\|YP_002731809.1\|	BMEA_A0033	hypothetical protein BMEA_A0033	Unknown (Prob.=0.2)	0.356	0	LPIPPGFKL binds to HLA-B0702 More...*	MRDMMGMMK binds to HLA-DR1 More...
31	gi\|225851577\|ref\|YP_002731810.1\|	dnaX	DNA polymerase III subunits gamma and tau	Unknown (Prob.=0.2)	0.115	0	RIAEAEKI binds to H-2-Kd More...	TIAEAEAER binds to H-2-IEg7 More...	YES	YES
32	gi\|225851578\|ref\|YP_002731811.1\|	BMEA_A0037	histidine triad protein	Cytoplasmic (Prob.=0.896)	0.048	0	WGHGVRETY binds to Mamu-A02 More...*	QKLIAEVRA binds to HLA-DRB10301 More...*
33	gi\|225851579\|ref\|YP_002731812.1\|	BMEA_A0038	peroxisomal NADH pyrophosphatase NUDT12	Cytoplasmic (Prob.=0.896)	0.084	0	QPWPFPYSL binds to HLA-B0702 More...*	GAKCLCPQC binds to H-2-IAk More...	YES	YES
34	gi\|225851580\|ref\|YP_002731813.1\|	BMEA_A0039	P-protein	Cytoplasmic (Prob.=0.926)	0.120	0	LSKNKQWAA binds to HLA-B8 More...	VHSHIHALG binds to HLA-DQA10301/DQB10 More...
35	gi\|225851581\|ref\|YP_002731814.1\|	kdsB	3-deoxy-D-manno-octulosonate cytidylyltransferase	Cytoplasmic (Prob.=0.896)	0.116	0	GEIDAVVNV binds to HLA-B44 More...	STRLPNKPL binds to H-2-IEd More...
36	gi\|225851582\|ref\|YP_002731815.1\|	BMEA_A0041	cytochrome c	Cytoplasmic Membrane (Prob.=0.802)	0.760	1	WDFEHLNKFL binds to H-2-Kk More...	DNERADLIA binds to H-2-IEk More...	YES	YES
37	gi\|225851583\|ref\|YP_002731816.1\|	BMEA_A0042	hypothetical protein BMEA_A0042	Cytoplasmic (Prob.=0.896)	0.137	0	DRLMAGMEL binds to HLA-B27 More...	VTQERVAHH binds to H-2-IAd More...
38	gi\|225851584\|ref\|YP_002731817.1\|	BMEA_A0043	hypothetical protein BMEA_A0043	Unknown (Prob.=0.2)	0.200	0	QSRFFPGLPL binds to Patr-B0101 More...*	GGGGRIEPP binds to HLA-DRB11301 More...*
39	gi\|225851585\|ref\|YP_002731818.1\|	cyoA	ubiquinol oxidase, subunit II	Cytoplasmic Membrane (Prob.=1)	0.227	3	TVTWISTHK binds to HLA-A11 More...	SAFLAGCQN binds to H-2-IEk More...
40	gi\|225851586\|ref\|YP_002731819.1\|	cyoB	cytochrome o ubiquinol oxidase subunit I	Cytoplasmic Membrane (Prob.=1)	0.287	14	FMLAFMPLYV binds to HLA-A0201 More...*	CFAGVVYWW binds to HLA-DRB40101 More...*	YES	YES
41	gi\|225851587\|ref\|YP_002731820.1\|	cyoC	cytochrome o ubiquinol oxidase subunit III	Cytoplasmic Membrane (Prob.=1)	0.337	5	FLSAFFTLV binds to HLA-A0201 More...*	AHEDHHDAG binds to HLA-DQA10301/DQB10 More...		YES
42	gi\|225851588\|ref\|YP_002731821.1\|	cyoD	cytochrome o ubiquinol oxidase subunit IV	Cytoplasmic Membrane (Prob.=1)	0.291	3	YLIGFVLAV binds to HLA-A0201 More...*	HQTHDHAAH binds to H-2-IAd More...
43	gi\|225851589\|ref\|YP_002731822.1\|	BMEA_A0048	SH3 type 3 domain-containing protein	Unknown (Prob.=0.2)	0.627	0	GPAMGPHF binds to HLA-B3501 More...*	PAWTRVNAG binds to HLA-DR7 More...
44	gi\|225851590\|ref\|YP_002731823.1\|	BMEA_A0049	surface antigen D15	Outer Membrane (Prob.=1)	0.382	0	ALDPGRKAY binds to HLA-A1 More...	GGGGSVRGY binds to HLA-DRB11301 More...*
45	gi\|225851591\|ref\|YP_002731824.1\|	BMEA_A0050	hypothetical protein BMEA_A0050	Unknown (This protein may have multiple localization sites.) (Prob.=0.626)	0.555	1	AVFAWPEQK binds to HLA-A1101 More...*	IAQLAAAAA binds to H-2-IAd More...
46	gi\|225851592\|ref\|YP_002731825.1\|	BMEA_A0052	hypothetical protein BMEA_A0052	Unknown (Prob.=0.25)	0.301	1	MPIELRHFV binds to HLA-B0702 More...*	LLLTAAAFA binds to H-2-IAg7 More...
47	gi\|225851593\|ref\|YP_002731826.1\|	BMEA_A0053	hypothetical protein BMEA_A0053	Cytoplasmic (Prob.=0.896)	0.320	0	IPWEMTWSL binds to HLA-B0702 More...*	NFADALADF binds to HLA-DRB10301 More...*
48	gi\|225851594\|ref\|YP_002731827.1\|	BMEA_A0054	hypothetical protein BMEA_A0054	Unknown (Prob.=0.2)	0.606	0	GPECAIFSPL binds to HLA-B7 More...	GSGLTTGFQ binds to HLA-DPB10401 More...*
49	gi\|225851595\|ref\|YP_002731828.1\|	BMEA_A0055	hypothetical protein BMEA_A0055	Unknown (Prob.=0.25)	0.455	1	SDFYDEFVV binds to Mamu-B01 More...*	QDQIMKMRK binds to HLA-DRB11101 More...*
50	gi\|225851596\|ref\|YP_002731829.1\|	BMEA_A0056	hypothetical protein BMEA_A0056	Unknown (Prob.=0.2)	0.740	1	SYLIAQYKL binds to HLA-A2402 More...*	VFVGFAHKP binds to HLA-DRB11501 More...*

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No Similarity to Human Protein
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MHC Class I & II Epitope Prediction by Vaxitope:
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