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Vaxign: Vaccine Target Prediction and Design

Query ID	Submitted at	Status
KVZJFWTDBW	2010-05-17 16:21:27	All steps finished at: 2010-05-18 00:49:22

Found 3282 protein(s).

Record: 1 to 50 of 3282 Records.

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#	Sequence ID	Gene Symbol	Protein Note	Localization (Probability)	Adhesin Probability	Trans-membrane helices	MHC I Binding	MHC II Binding	Similar Human Protein	Similar Mouse Protein
1	gi|256014796|ref|YP_003104805.1|	repC	replication initiation protein RepC	Unknown (Prob.=0.2)	0.245	0	IAFGFSLAPL binds to Patr-B*0101 More...	TIAYILQRY binds to H-2-IEg7 More...
2	gi|256014797|ref|YP_003104806.1|	BMI_II2	hypothetical protein BMI_II2	Unknown (Prob.=0.2)	0.000	0	FPAIYYGFHF binds to HLA-B*3501 More...	WNFHAGARH binds to H-2-IAd More...
3	gi|256014798|ref|YP_003104807.1|	BMI_II3	hypothetical protein BMI_II3	Unknown (Prob.=0.2)	0.234	0	ARLWNVAGL binds to HLA-B27 More...	GRGEQAQEK binds to HLA-DPB1*0901 More...
4	gi|256014799|ref|YP_003104808.1|	BMI_II4	hypothetical protein BMI_II4	Unknown (Prob.=0.2)	0.000	0	FPFAAMVRQY binds to HLA-B*3501 More...	SGFSWVVYE binds to HLA-DPB1*0401 More...
5	gi|256014800|ref|YP_003104809.1|	BMI_II5	ribokinase, putative	Cytoplasmic (Prob.=0.997)	0.283	0	EVKHFTPFK binds to HLA-A11 More...	GANQAVAVA binds to H-2-IAg7 More...	YES	YES
6	gi|256014801|ref|YP_003104810.1|	iunH	inosine-uridine preferring nucleoside hydrolase	Cytoplasmic (Prob.=0.896)	0.151	0	APLHDPNVI binds to HLA-B*0702 More...	GTVTLCPIG binds to H-2-IAk More...
7	gi|256014802|ref|YP_003104811.1|	BMI_II7	sugar ABC transporter, permease protein	Cytoplasmic Membrane (Prob.=1)	0.238	7	MEGMMLVAAL binds to Mamu-A*11 More...	ALNIAAAAA binds to H-2-IAg7 More...
8	gi|256014803|ref|YP_003104812.1|	BMI_II8	ABC transporter, permease protein, putative	Cytoplasmic Membrane (Prob.=1)	0.228	8	LLPSLGWFSL binds to HLA-A2.1 More...	GGIWLYWTR binds to H-2-IAk More...
9	gi|256014804|ref|YP_003104813.1|	BMI_II9	ABC transporter, ATP-binding protein	Cytoplasmic Membrane (Prob.=0.982)	0.138	0	TPAVLGPYML binds to HLA-B*07 More...	TAAPDPADR binds to H-2-IEg7 More...	YES	YES
10	gi|256014805|ref|YP_003104814.1|	BMI_II10	lipoprotein, Bmp family	Unknown (Prob.=0.25)	0.238	1	EAKDKIMLI binds to HLA-B8 More...	GYDNVYSIQ binds to H-2-IAk More...
11	gi|256014806|ref|YP_003104815.1|	BMI_II11	hypothetical protein BMI_II11	Unknown (Prob.=0.25)	0.275	0	YTLPNPSQTL binds to H-2-Db More...	GNGGNVQQL binds to HLA-DRB1*1301 More...
12	gi|256014807|ref|YP_003104816.1|	entD	enterobactin synthetase, component D, putative	Unknown (Prob.=0.2)	0.196	0	YSASKPLID binds to Patr-B*0901 More...	QWRRGQRFP binds to HLA-DRB1*1101 More...
13	gi|256014808|ref|YP_003104817.1|	entA	2,3-dihydroxybenzoate-2,3-dehydrogenase	Cytoplasmic (Prob.=0.997)	0.282	0	LLSQWVPVFR binds to HLA-A*1101 More...	AAYCASKAA binds to H-2-IAd More...	YES	YES
14	gi|256014809|ref|YP_003104818.1|	entB	isochorismatase	Cytoplasmic (Prob.=0.896)	0.197	0	DWLQKRVLEL binds to Patr-A*0901 More...	LKYVATRCG binds to HLA-DR7 More...
15	gi|256014810|ref|YP_003104819.1|	entE	2,3-dihydroxybenzoate-AMP ligase	Cytoplasmic Membrane (Prob.=0.846)	0.133	0	APNPEPLNCF binds to HLA-B*3508 More...	SPTGAGEVA binds to H-2-IAg7 More...	YES	YES
16	gi|256014811|ref|YP_003104820.1|	entC	isochorismate synthase	Cytoplasmic (Prob.=0.896)	0.136	0	MADPEADRK binds to HLA-A1 More...	ALQLACLIH binds to H-2-IEk More...
17	gi|256014812|ref|YP_003104821.1|	entF	enterobactin synthetase, component F	Cytoplasmic (Prob.=0.896)	0.078	0	DGPVRLPIL binds to H-2-Dd More...	YIWYIRAHH binds to H-2-IAd More...
18	gi|256014813|ref|YP_003104822.1|	BMI_II18	oxidoreductase, molybdopterin-binding	Cytoplasmic Membrane (Prob.=0.916)	0.276	0	IQGGRGGYW binds to Mamu-B*17 More...	SKYVKSIEL binds to HLA-DR7 More...
19	gi|256014814|ref|YP_003104823.1|	BMI_II19	HupC/HyaC/HydC family protein	Cytoplasmic Membrane (Prob.=1)	0.330	4	LPRDFVEHL binds to HLA-B7 More...	WIWAASIFF binds to HLA-DRB1*1302 More...
20	gi|256014815|ref|YP_003104824.1|	BMI_II20	pentapeptide MXKDX repeat protein	Unknown (Prob.=0.25)	0.371	1	SDNMSKDAM binds to Patr-B*2401 More...	APKFNRSFV binds to HLA-DRB1*1302 More...
21	gi|256014816|ref|YP_003104825.1|	BMI_II21	RNA polymerase sigma-70 factor, ECF subfamily	Cytoplasmic (Prob.=0.896)	0.191	0	SERTAGLI binds to H-2-Kk More...	NAIARHKLV binds to H-2-IAd More...
22	gi|256014817|ref|YP_003104826.1|	BMI_II22	extracytoplasmic function alternative sigma factor	Cytoplasmic Membrane (Prob.=1)	0.105	5	WALWERACW binds to Mamu-B*17 More...	AVLLPALFA binds to H-2-IAg7 More...
23	gi|256014818|ref|YP_003104827.1|	BMI_II23	transcriptional regulator, GntR family	Unknown (Prob.=0.2)	0.062	0	YAFHDAIVI binds to Mamu-B*01 More...	IATRAAGRA binds to HLA-DQA1*0301/DQB1*0 More...
24	gi|256014819|ref|YP_003104828.1|	BMI_II24	branched chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative	Periplasmic (Prob.=0.944)	0.613	0	RNKGKEVL binds to HLA-B8 More...	GLLYRAAVL binds to H-2-IAg7 More...
25	gi|256014820|ref|YP_003104829.1|	BMI_II25	branched-chain amino acid ABC transporter, permease protein	Cytoplasmic Membrane (Prob.=1)	0.181	9	VSYPFYRL binds to H-2-Kb More...	VHAFGHAHE binds to HLA-DQA1*0301/DQB1*0 More...
26	gi|256014821|ref|YP_003104830.1|	BMI_II26	branched-chain amino acid ABC transporter, permease protein	Cytoplasmic Membrane (Prob.=1)	0.343	10	SDYKALASA binds to Patr-B*2401 More...	LVAGWFSTK binds to HLA-DRB1*1301 More...
27	gi|256014822|ref|YP_003104831.1|	BMI_II27	branched-chain amino acid ABC transporter, ATP-binding protein	Cytoplasmic Membrane (Prob.=0.788)	0.134	0	RRYKVQFTF binds to HLA-B27 More...	SVLVYGEII binds to H-2-IAg7 More...	YES	YES
28	gi|256014823|ref|YP_003104832.1|	BMI_II28	branched-chain amino acid ABC transporter, ATP-binding protein	Cytoplasmic Membrane (Prob.=0.788)	0.106	0	RTLLGNPLVM binds to Mamu-A*02 More...	APKIVAVVG binds to H-2-IAg7 More...	YES	YES
29	gi|256014824|ref|YP_003104833.1|	BMI_II29	glyoxalase family protein	Unknown (Prob.=0.2)	0.169	0	ILERAGASY binds to HLA-A1 More...	APLEVGLAV binds to H-2-IAg7 More...
30	gi|256014825|ref|YP_003104834.1|	BMI_II30	3-oxoacyl-(acyl-carrier-protein) reductase, putative	Cytoplasmic (Prob.=0.997)	0.415	0	SEIASVIAF binds to HLA-B44 More...	TIKADASSA binds to H-2-IEg7 More...	YES	YES
31	gi|256014826|ref|YP_003104835.1|	BMI_II31	oxidoreductase, short chain dehydrogenase/reductase family	Unknown (This protein may have multiple localization sites.) (Prob.=0.74)	0.336	0	SEVVDPVVF binds to HLA-B*4001 More...	GVAGRAAFD binds to HLA-DRB1*1301 More...	YES	YES
32	gi|256014827|ref|YP_003104836.1|	BMI_II32	acetoin dehydrogenase, alpha/beta subunit, putative	Cytoplasmic Membrane (Prob.=0.982)	0.135	0	IRMLAQRTL binds to HLA-B*2705 More...	QFLAKALGY binds to H-2-IAs More...	YES	YES
33	gi|256014828|ref|YP_003104837.1|	BMI_II33	acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase, putative	Cytoplasmic (Prob.=0.997)	0.155	0	MRRTIARRLL binds to HLA-B*0702 More...	ARENRLKPE binds to H-2-IEd More...	YES	YES
34	gi|256014829|ref|YP_003104838.1|	BMI_II34	shikimate dehydrogenase family protein	Unknown (Prob.=0.2)	0.237	0	IIADPVHHV binds to HLA-A*020101 More...	GLKYAAAAL binds to H-2-IAg7 More...
35	gi|256014830|ref|YP_003104839.1|	BMI_II35	hypothetical protein BMI_II35	Unknown (Prob.=0.2)	0.413	0	RPRPVAIWK binds to Patr-B*1301 More...	PKYSQMSAR binds to HLA-DR1 More...
36	gi|256014831|ref|YP_003104840.1|	BMI_II36	hypothetical protein BMI_II36	Unknown (Prob.=0.2)	0.350	0	GVRGRIWQL binds to HLA-B8 More...	GVRGRIWQL binds to HLA-DRB1*1301 More...
37	gi|256014832|ref|YP_003104841.1|	mgtA	magnesium-translocating P-type ATPase	Cytoplasmic Membrane (Prob.=1)	0.272	8	SWLLIRFMLI binds to Patr-A*0901 More...	SVLVASAFI binds to H-2-IAg7 More...	YES	YES
38	gi|256014833|ref|YP_003104842.1|	BMI_II38	hypothetical protein BMI_II38	Unknown (Prob.=0.2)	0.103	1	SPRRRGEPPL binds to HLA-B7 More...	LWQWMKGRM binds to HLA-DR1 More...
39	gi|256014834|ref|YP_003104843.1|	BMI_II39	hypothetical protein BMI_II39	Unknown (Prob.=0.25)	0.407	1	ATYLILFAL binds to HLA-B*1402 More...	IAVATYLIL binds to H-2-IAs More...
40	gi|256014835|ref|YP_003104844.1|	mgtC	Mg2+ transport ATPase	Cytoplasmic Membrane (Prob.=0.946)	0.247	4	EAQVRALL binds to HLA-B8 More...	HAAVATVFI binds to H-2-IAg7 More...
41	gi|256014836|ref|YP_003104845.1|	BMI_II41	sensor histidine kinase	Cytoplasmic Membrane (Prob.=1)	0.316	3	VESSGGTI binds to H-2-Kk More...	GLKLVSAEI binds to H-2-IAg7 More...
42	gi|256014837|ref|YP_003104846.1|	BMI_II42	DNA-binding response regulator, LuxR family	Cytoplasmic (Prob.=0.997)	0.098	0	TEFHARMKGL binds to HLA-B*4001 More...	ASVNEFLKH binds to H-2-IAs More...
43	gi|256014838|ref|YP_003104847.1|	BMI_II44	response regulator	Cytoplasmic (Prob.=0.896)	0.125	0	RLQEEPFSL binds to HLA-A*020101 More...	KIMFITGFA binds to HLA-DPB1*0401 More...	YES
44	gi|256014839|ref|YP_003104848.1|	BMI_II45	hypothetical protein BMI_II45	Unknown (Prob.=0.2)	0.000	0	KPATLASLL binds to Patr-B*1301 More...	WKHIVFMIA binds to HLA-DRB1*0401 More...
45	gi|256014840|ref|YP_003104849.1|	BMI_II46	formiminoglutamase, putative	Unknown (Prob.=0.2)	0.191	0	DPRMFAEPL binds to HLA-B7 More...	EALCVALHH binds to H-2-IAd More...
46	gi|256014841|ref|YP_003104850.1|	BMI_II47	inositol monophosphatase family protein	Unknown (Prob.=0.2)	0.367	0	SEVAAAAAA binds to HLA-B44 More...	SRYGVDCYA binds to H-2-IEk More...	YES	YES
47	gi|256014842|ref|YP_003104851.1|	BMI_II48	lysophospholipase L2, putative	Cytoplasmic Membrane (Prob.=1)	0.271	0	YADDLDHFL binds to Patr-B*0101 More...	LGGPTVRWV binds to HLA-DRB1*1301 More...
48	gi|256014843|ref|YP_003104852.1|	BMI_II49	hypothetical protein BMI_II49	Unknown (Prob.=0.2)	0.650	0	NGPCSGCFL binds to H-2-Dd More...	GTQINCSLQ binds to H-2-IAk More...
49	gi|256014844|ref|YP_003104853.1|	BMI_II50	hypothetical protein BMI_II50	Unknown (Prob.=0.25)	0.300	0	GLRVQIQYY binds to HLA-A3 More...	TLAADNGLR binds to H-2-IEg7 More...
50	gi|256014845|ref|YP_003104854.1|	BMI_II51	hypothetical protein BMI_II51	Unknown (Prob.=0.2)	0.344	0	FERSPKMMFI binds to Mamu-A*11 More...	KAKYSSLWI binds to HLA-DRB1*0701 More...

Filter Analysis Results
Select Subcellular Localization	Any Localization Cellwall Cytoplasmic Cytoplasmic Membrane Extracellular Outer Membrane Periplasmic Unknown
Maximum Number of Transmembrane Helices
Minimum Adhesin Probability (0-1.0)
P Value Cutoff
No Similarity to Human Protein
No Similarity to Mouse Protein
MHC Class I & II Epitope Prediction by Vaxitope:
MHC Host Species	any species chimpanzee human macaque mouse
MHC Allele
Epitope Length
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