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Vaxign: Vaccine Target Prediction and Design

Query ID	Submitted at	Status
Y47WMXFPF2	2010-05-17 16:15:43	All steps finished at: 2010-05-17 23:50:54

Found 2890 protein(s).

Record: 1 to 50 of 2890 Records.

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#	Sequence ID	Gene Symbol	Protein Note	Localization (Probability)	Adhesin Probability	Trans-membrane helices	MHC I Binding	MHC II Binding	Similar Human Protein	Similar Mouse Protein
1	gi|148558266|ref|YP_001257088.1|	repC	replication initiation protein RepC	Unknown (Prob.=0.2)	0.257	0	IAFGFSLAPL binds to Patr-B*0101 More...	TIAYILQRY binds to H-2-IEg7 More...
2	gi|148558035|ref|YP_001257089.1|	iunH	inosine-uridine preferring nucleoside hydrolase	Cytoplasmic (Prob.=0.896)	0.154	0	APLHDPNVI binds to HLA-B*0702 More...	GTVTLCPIG binds to H-2-IAk More...
3	gi|148557965|ref|YP_001257090.1|	BOV_A0004	ABC transporter, permease protein	Cytoplasmic Membrane (Prob.=1)	0.238	7	MEGMMLVAAL binds to Mamu-A*11 More...	ALNIAAAAA binds to H-2-IAg7 More...
4	gi|148558713|ref|YP_001257091.1|	BOV_A0005	putative ABC transporter, permease protein	Cytoplasmic Membrane (Prob.=1)	0.223	8	YLIPFFLTV binds to HLA-A*020101 More...	GGIWLYWTR binds to H-2-IAk More...
5	gi|148557854|ref|YP_001257092.1|	BOV_A0006	ABC transporter, ATP-binding protein	Cytoplasmic Membrane (Prob.=0.982)	0.138	0	TPAVLGPYML binds to HLA-B*07 More...	TAAPDPADR binds to H-2-IEg7 More...	YES	YES
6	gi|148558348|ref|YP_001257093.1|	BOV_A0007	Bmp family lipoprotein	Unknown (Prob.=0.25)	0.252	1	EAKDKIMLI binds to HLA-B8 More...	GYDNVYSIQ binds to H-2-IAk More...
7	gi|148558179|ref|YP_001257094.1|	BOV_A0009	hypothetical protein BOV_A0009	Unknown (This protein may have multiple localization sites.) (Prob.=0.49)	0.267	0	YTLPNPSQTL binds to H-2-Db More...	GNGGNVQQL binds to HLA-DRB1*1301 More...
8	gi|148558449|ref|YP_001257095.1|	BOV_A0008	putative enterobactin synthetase, component D	Unknown (Prob.=0.2)	0.263	0	YSASKPLID binds to Patr-B*0901 More...	QWRRGQRFP binds to HLA-DRB1*1101 More...
9	gi|148557948|ref|YP_001257096.1|	entA	2,3-dihydroxybenzoate-2,3-dehydrogenase	Cytoplasmic (Prob.=0.997)	0.282	0	LLSQWVPVFR binds to HLA-A*1101 More...	AAYCASKAA binds to H-2-IAd More...	YES	YES
10	gi|148558790|ref|YP_001257097.1|	entB	isochorismatase	Cytoplasmic (Prob.=0.896)	0.197	0	DWLQKRVLEL binds to Patr-A*0901 More...	LKYVATRCG binds to HLA-DR7 More...
11	gi|148558241|ref|YP_001257098.1|	entE	enterobactin synthase subunit E	Cytoplasmic Membrane (Prob.=0.846)	0.126	0	APNPEPLNCF binds to HLA-B*3508 More...	SPTGAGEVA binds to H-2-IAg7 More...	YES	YES
12	gi|148558766|ref|YP_001257099.1|	entC	isochorismate synthase	Cytoplasmic (Prob.=0.896)	0.149	0	MADPEADRK binds to HLA-A1 More...	ALQLACLIH binds to H-2-IEk More...
13	gi|148558109|ref|YP_001257100.1|	BOV_A0014	putative enterobactin synthetase, component F	Cytoplasmic (Prob.=0.896)	0.077	0	DGPVRLPIL binds to H-2-Dd More...	YIWYIRAHH binds to H-2-IAd More...
14	gi|148557981|ref|YP_001257101.1|	BOV_A0015	oxidoreductase, molybdopterin-binding	Cytoplasmic Membrane (Prob.=0.916)	0.268	0	IQGGRGGYW binds to Mamu-B*17 More...	SKYVKSIEL binds to HLA-DR7 More...
15	gi|148558492|ref|YP_001257102.1|	BOV_A0016	HupC/HyaC/HydC family protein	Cytoplasmic Membrane (Prob.=1)	0.358	4	LPRDFVEHL binds to HLA-B7 More...	WIWAASIFF binds to HLA-DRB1*1302 More...
16	gi|148557842|ref|YP_001257103.1|	BOV_A0017	hypothetical protein BOV_A0017	Unknown (Prob.=0.25)	0.467	1	SDNMSKDAM binds to Patr-B*2401 More...	PAAFAEDAM binds to H-2-IEg7 More...
17	gi|148558369|ref|YP_001257104.1|	BOV_A0018	ECF subfamily RNA polymerase sigma factor	Cytoplasmic (Prob.=0.896)	0.057	0	SERTAGLI binds to H-2-Kk More...	MIARDADVT binds to H-2-IEg7 More...
18	gi|148558229|ref|YP_001257105.1|	BOV_A0019	hypothetical protein BOV_A0019	Cytoplasmic Membrane (Prob.=1)	0.341	6	FIALWYTLGI binds to HLA-A2 More...	AVLLPALFA binds to H-2-IAg7 More...
19	gi|148558444|ref|YP_001257106.1|	BOV_A0020	GntR family transcriptional regulator	Unknown (Prob.=0.2)	0.062	0	YAFHDAIVI binds to Mamu-B*01 More...	IATRAAGRA binds to HLA-DQA1*0301/DQB1*0 More...
20	gi|148558149|ref|YP_001257107.1|	BOV_A0021	putative branched chain amino acid ABC transporter, periplasmic amino acid-binding protein	Periplasmic (Prob.=0.944)	0.611	0	RNKGKEVL binds to HLA-B8 More...	GLLYRAAVL binds to H-2-IAg7 More...
21	gi|148557921|ref|YP_001257108.1|	BOV_A0023	branched-chain amino acid ABC transporter, permease protein	Cytoplasmic Membrane (Prob.=1)	0.342	10	SDYKALASA binds to Patr-B*2401 More...	ISLGHALGR binds to H-2-IAs More...
22	gi|148557968|ref|YP_001257109.1|	BOV_A0024	branched-chain amino acid ABC transporter, ATP-binding protein	Cytoplasmic Membrane (Prob.=0.788)	0.132	0	RRYKVQFTF binds to HLA-B27 More...	SVLVYGEII binds to H-2-IAg7 More...	YES	YES
23	gi|148558045|ref|YP_001257110.1|	BOV_A0025	branched-chain amino acid ABC transporter, ATP-binding protein	Unknown (This protein may have multiple localization sites.) (Prob.=0.576)	0.110	0	RTLLGNPLVM binds to Mamu-A*02 More...	APKIVAVVG binds to H-2-IAg7 More...	YES	YES
24	gi|148558620|ref|YP_001257111.1|	BOV_A0026	glyoxalase family protein	Unknown (Prob.=0.2)	0.184	0	ILERAGASY binds to HLA-A1 More...	APLEVGLAV binds to H-2-IAg7 More...
25	gi|148558742|ref|YP_001257112.1|	BOV_A0027	putative 3-oxoacyl-(acyl-carrier-protein) reductase	Cytoplasmic (Prob.=0.997)	0.415	0	SEIASVIAF binds to HLA-B44 More...	TIKADASSA binds to H-2-IEg7 More...	YES	YES
26	gi|148558133|ref|YP_001257113.1|	BOV_A0028	short chain dehydrogenase/reductase family oxidoreductase	Unknown (This protein may have multiple localization sites.) (Prob.=0.74)	0.336	0	SEVVDPVVF binds to HLA-B*4001 More...	GVAGRAAFD binds to HLA-DRB1*1301 More...	YES	YES
27	gi|148558786|ref|YP_001257114.1|	BOV_A0029	putative acetoin dehydrogenase, alpha/beta subunit	Cytoplasmic Membrane (Prob.=0.982)	0.131	0	IRTLAQRTL binds to HLA-B*2705 More...	QFLAKALGY binds to H-2-IAs More...	YES	YES
28	gi|148558018|ref|YP_001257115.1|	BOV_A0031	shikimate dehydrogenase family protein	Unknown (Prob.=0.2)	0.251	0	IIADPVHHV binds to HLA-A*020101 More...	GLKYAAAAL binds to H-2-IAg7 More...
29	gi|148558153|ref|YP_001257116.1|	BOV_A0032	hypothetical protein BOV_A0032	Unknown (Prob.=0.2)	0.413	0	RPRPVAIWK binds to Patr-B*1301 More...	PKYSQMSAR binds to HLA-DR1 More...
30	gi|148558615|ref|YP_001257117.1|	mgtA	magnesium-translocating P-type ATPase	Cytoplasmic Membrane (Prob.=1)	0.272	8	SWLLIRFMLI binds to Patr-A*0901 More...	SVLVASAFI binds to H-2-IAg7 More...	YES	YES
31	gi|148557865|ref|YP_001257118.1|	BOV_A0034	hypothetical protein BOV_A0034	Unknown (Prob.=0.25)	0.407	1	ATYLILFAL binds to HLA-B*1402 More...	IAVATYLIL binds to H-2-IAs More...
32	gi|148558210|ref|YP_001257119.1|	BOV_A0035	MgtC family protein	Cytoplasmic Membrane (Prob.=0.946)	0.249	4	EAQVRALL binds to HLA-B8 More...	HAAVATVFI binds to H-2-IAg7 More...
33	gi|148558508|ref|YP_001257120.1|	BOV_A0036	hypothetical protein BOV_A0036	Unknown (Prob.=0.2)	0.000	1	FLLIIVFNI binds to HLA-A*0201 More...	TFLLIIVFN binds to HLA-DRB4*0101 More...
34	gi|148557958|ref|YP_001257121.1|	BOV_A0037	sensor histidine kinase	Cytoplasmic Membrane (Prob.=1)	0.478	3	VESSGGTI binds to H-2-Kk More...	GLKLVSAEI binds to H-2-IAg7 More...
35	gi|148558301|ref|YP_001257122.1|	BOV_A0038	LuxR family DNA-binding response regulator	Cytoplasmic (Prob.=0.997)	0.098	0	TEFHARMKGL binds to HLA-B*4001 More...	ASVNEFLKH binds to H-2-IAs More...
36	gi|148558406|ref|YP_001257123.1|	BOV_A0040	response regulator	Cytoplasmic (Prob.=0.896)	0.125	0	RLQEEPFSL binds to HLA-A*020101 More...	KIMFITGFA binds to HLA-DPB1*0401 More...	YES
37	gi|148558042|ref|YP_001257124.1|	BOV_A0041	hypothetical protein BOV_A0041	Unknown (Prob.=0.2)	0.000	0	KPATLASLL binds to Patr-B*1301 More...	WKHIVFMIA binds to HLA-DRB1*0401 More...
38	gi|148558365|ref|YP_001257125.1|	BOV_A0042	putative formiminoglutamase	Unknown (Prob.=0.2)	0.201	0	DPRMFAEPL binds to HLA-B7 More...	EALCVALHH binds to H-2-IAd More...
39	gi|148557902|ref|YP_001257126.1|	BOV_A0043	inositol monophosphatase family protein	Unknown (Prob.=0.2)	0.360	0	SEVAAAAAA binds to HLA-B44 More...	SRYGVDCYA binds to H-2-IEk More...	YES	YES
40	gi|148558687|ref|YP_001257127.1|	BOV_A0044	putative lysophospholipase L2	Cytoplasmic Membrane (Prob.=1)	0.274	0	YADDLDHFL binds to Patr-B*0101 More...	LGGPTVRWV binds to HLA-DRB1*1301 More...
41	gi|148557883|ref|YP_001257128.1|	BOV_A0045	hypothetical protein BOV_A0045	Unknown (Prob.=0.25)	0.300	0	GLRVQIQYY binds to HLA-A3 More...	TLAADNGLR binds to H-2-IEg7 More...
42	gi|148558297|ref|YP_001257129.1|	BOV_A0046	hypothetical protein BOV_A0046	Unknown (Prob.=0.2)	0.286	0	FERSPKMMFI binds to Mamu-A*11 More...	MVPVKMATL binds to HLA-DRB1*0101 More...
43	gi|148557839|ref|YP_001257130.1|	gltB	glutamate synthase, large subunit	Cytoplasmic Membrane (Prob.=0.982)	0.107	0	REVPVDNSSL binds to HLA-B*4001 More...	EHEVVKRYI binds to HLA-DRB1*1501 More...
44	gi|148558389|ref|YP_001257131.1|	gltD	glutamate synthase subunit beta	Cytoplasmic (Prob.=0.926)	0.106	0	HGPTGCPV binds to HLA-A*0201 More...	FIKADLAFI binds to HLA-DRB1*1302 More...	YES	YES
45	gi|148558349|ref|YP_001257132.1|	BOV_A0051	amino acid permease family protein	Cytoplasmic Membrane (Prob.=1)	0.259	12	VSFWFPHL binds to H-2-Kb More...	EIEFWFALI binds to HLA-DRB1*1501 More...	YES	YES
46	gi|148558575|ref|YP_001257133.1|	BOV_A0052	hypothetical protein BOV_A0052	Unknown (Prob.=0.25)	0.425	1	RPRTLFDLL binds to Patr-B*1301 More...	GFVRDDYFN binds to HLA-DRB4*0101 More...
47	gi|148558474|ref|YP_001257134.1|	BOV_A0053	putative lipoprotein	Unknown (Prob.=0.25)	0.332	0	VARVRALAI binds to HLA-B8 More...	AIYNWLINQ binds to HLA-DRB1*0701 More...
48	gi|148558165|ref|YP_001257135.1|	virB11	P-type DNA transfer ATPase VirB11	Cytoplasmic (Prob.=0.896)	0.104	0	CERASAWEY binds to HLA-B44 More...	PNHVHLFYP binds to HLA-DRB1*1501 More...
49	gi|148557830|ref|YP_001257136.1|	BOV_A0055	type IV secretion system protein VirB10	Unknown (Prob.=0.2)	0.397	1	ARIYVLWTR binds to HLA-B*2705 More...	GGGGSNQIN binds to HLA-DRB1*1301 More...
50	gi|148558751|ref|YP_001257137.1|	virB9	P-type conjugative transfer protein VirB9	Unknown (Prob.=0.25)	0.271	0	FLLACILITL binds to HLA-A*0201 More...	AAAAAAAVA binds to H-2-IAg7 More...

Filter Analysis Results
Select Subcellular Localization	Any Localization Cellwall Cytoplasmic Cytoplasmic Membrane Extracellular Outer Membrane Periplasmic Unknown
Maximum Number of Transmembrane Helices
Minimum Adhesin Probability (0-1.0)
P Value Cutoff
No Similarity to Human Protein
No Similarity to Mouse Protein
MHC Class I & II Epitope Prediction by Vaxitope:
MHC Host Species	any species chimpanzee human macaque mouse
MHC Allele
Epitope Length
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