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Vaxign Statistics

Currently, Vaxign includes 116 precomputed genomes:

Index Pathogen Strain Refseq Accession No. of proteins
Bacillus anthracis (3)
1 Bacillus anthracis str. 'Ames Ancestor' NC_007323, NC_007322(pX01), NC_007323(pX02) 5584
2 Bacillus anthracis str. Ames NC_007530 5311
3 Bacillus anthracis str. Sterne NC_005945 5287
Brucella (31)
4 Brucella abortus 2308 NC_007618 (Chr I), NC_007624 (Chr II) 3034
5 Brucella abortus biovar 1 str. 9-941 NC_006932 (Chr I), NC_006933 (Chr II) 3085
6 Brucella abortus bv. 2 str. 86/8/59 3233
7 Brucella abortus bv. 3 str. Tulya 3261
8 Brucella abortus bv. 4 str. 292 3219
9 Brucella abortus bv. 6 str. 870 3219
10 Brucella abortus bv. 9 str. C68 3192
11 Brucella abortus NCTC 8038 3044
12 Brucella abortus S19 NC_010742 (Chr I), NC_010740 (Chr II) 3000
13 Brucella canis ATCC 23365 3251
14 Brucella ceti B1/94 3189
15 Brucella ceti M13/05/1 3230
16 Brucella ceti M490/95/1 3208
17 Brucella ceti M644/93/1 3243
18 Brucella melitensis 16M NC_003317 (Chr I), NC_003318 (Chr II) 3198
19 Brucella melitensis ATCC 23457 3136
20 Brucella melitensis bv. 1 str. Rev.1 3221
21 Brucella melitensis bv. 2 str. 63/9 3209
22 Brucella melitensis bv. 3 str. Ether 3239
23 Brucella microti CCM 4915 3282
24 Brucella neotomae 5K33 3217
25 Brucella abortus ATCC 25840 2890
26 Brucella pinnipedialis B2/94 3290
27 Brucella pinnipedialis M163/99/10 3296
28 Brucella pinnipedialis M292/94/1 3237
29 Brucella sp. F5/99 3223
30 Brucella suis 1330 NC_004310 (Chr I), NC_004311 (Chr II) 3271
31 Brucella suis ATCC 23445 3241
32 Brucella suis bv. 3 str. 686 3230
33 Brucella suis bv. 4 str. 40 3054
34 Brucella suis bv. 5 str. 513 3246
Campylobacter (10)
35 Campylobacter concisus 13826 NC_009802, NC_009796(pCCON16), NC_009795(pCCON31) 1985
36 Campylobacter curvus 525.92 NC_009715 1931
37 Campylobacter fetus subsp. fetus 82-40 NC_008599 1719
38 Campylobacter hominis ATCC BAA-381 NC_009714, NC_009713(pCH4) 1687
39 Campylobacter jejuni RM1221 NC_003912 1838
40 Campylobacter jejuni subsp. doylei 269.97 NC_009707 1731
41 Campylobacter jejuni subsp. jejuni 81-176 NC_008787, NC_008770(pVir), NC_008790(pTet) 1758
42 Campylobacter jejuni subsp. jejuni 81116 NC_009839 1626
43 Campylobacter jejuni subsp. jejuni NCTC 11168 NC_002163 1623
44 Campylobacter lari RM2100 NC_012039, NC_012040(pCL2100) 1545
Clostridium (10)
45 Clostridium botulinum A str. ATCC 19397 NC_009697 3548
46 Clostridium botulinum A str. ATCC 3502 NC_009495, NC_009496(pBOT3502) 3590
47 Clostridium botulinum A str. Hall NC_009698 3404
48 Clostridium botulinum A2 str. Kyoto str. Kyoto-F NC_012563 3878
49 Clostridium botulinum A3 str. Loch Maree NC_010520, NC_010418(pCLK) 3984
50 Clostridium botulinum B str. Eklund 17B NC_010674, NC_010680(pCLL) 3527
51 Clostridium botulinum B1 str. Okra okra NC_010516, NC_010379(pCLD) 3852
52 Clostridium botulinum E3 str. Alaska E43 NC_010723 3256
53 Clostridium botulinum F str. Langeland NC_009699, NC_009700(pCLI) 3659
54 Clostridium tetani E88 NC_004557, NC_004565(pE88) 2432
Corynebacterium diphtheriae (1)
55 Corynebacterium diphtheriae NCTC 13129 NC_002935 2272
Coxiella burnetii (5)
56 Coxiella burnetii CbuG_Q212 NC_011527 1871
57 Coxiella burnetii CbuK_Q154 NC_011528, NC_011526(pQpRS_K_Q154) 1947
58 Coxiella burnetii Dugway 5J108-111 NC_009727, NC_009726(pQpDG) 2045
59 Coxiella burnetii RSA 331 NC_010117, NC_010115(QpH1) 1975
60 Coxiella burnetii RSA 493 NC_002971, NC_004704(pQpH1) 1848
Escherichia coli (7)
61 Escherichia coli 536 NC_008253 4620
62 Escherichia coli CFT073 NC_004431 5339
63 Escherichia coli F11 NZ_AAJU00000000 4704
64 Escherichia coli O157:H7 EDL933 NC_002655, NC_007414 (pO157) 5312
65 Escherichia coli O157:H7 str. Sakai NC_002695, NC_002128 (pO157), NC_002127 (pOSAK1) 5318
66 Escherichia coli str. K-12 substr. MG1655 NC_000913 4133
67 Escherichia coli UTI89 NC_007946, NC_007941(pUTI89) 5166
Francisella (9)
68 Francisella philomiragia subsp. philomiragia ATCC 25017 NC_010336, NC_010331(pFPHI01) 1915
69 Francisella tularensis subsp. holarctica NC_007880 1754
70 Francisella tularensis subsp. holarctica FTNF002-00 NC_009749 1580
71 Francisella tularensis subsp. holarctica OSU18 NC_008369 1555
72 Francisella tularensis subsp. mediasiatica FSC147 NC_010677 1406
73 Francisella tularensis subsp. novicida U112 NC_008601 1719
74 Francisella tularensis subsp. tularensis FSC198 NC_008245 1605
75 Francisella tularensis subsp. tularensis SCHU S4 NC_006570 1603
76 Francisella tularensis subsp. tularensis WY96-3418 NC_009257 1634
Haemophilus influenzae (4)
77 Haemophilus influenzae 86-028NP NC_007146 1792
78 Haemophilus influenzae PittEE NC_009566 1619
79 Haemophilus influenzae PittGG NC_009567 1667
80 Haemophilus influenzae Rd KW20 NC_000907 1657
Helicobacter pylori (6)
81 Helicobacter pylori 26695 NC_000915 1576
82 Helicobacter pylori G27 NC_011333, NC_011334(pHPG27) 1504
83 Helicobacter pylori HPAG1 NC_008086, NC_008087(pHPAG1) 1544
84 Helicobacter pylori J99 NC_000921 1489
85 Helicobacter pylori P12 NC_011498, NC_011499(HPP12) 1579
86 Helicobacter pylori Shi470 NC_010698 1569
Human immunodeficiency virus (2)
87 Human immunodeficiency virus 1 NC_001802 24
88 Human immunodeficiency virus 2 NC_001722 9
Legionella pneumophila (4)
89 Legionella pneumophila str. Corby 3206
90 Legionella pneumophila str. Lens 2934
91 Legionella pneumophila str. Paris 3166
92 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 2942
Listeria monocytogenes (3)
93 Listeria monocytogenes EGD-e 2846
94 Listeria monocytogenes HCC23 2974
95 Listeria monocytogenes str. 4b F2365 2821
Measles virus (1)
96 Measles virus NC_001498 7
Mycobacterium tuberculosis (2)
97 Mycobacterium tuberculosis CDC1551 NC_002755 4189
98 Mycobacterium tuberculosis H37Rv NC_000962 3989
Neisseria meningitidis (4)
99 Neisseria meningitidis 053442 NC_010120 2020
100 Neisseria meningitidis FAM18 NC_008767 1917
101 Neisseria meningitidis MC58 NC_003112 2063
102 Neisseria meningitidis Z2491 NC_003116 1909
NERVE (2)
103 NERVE gram negative 38
104 NERVE gram postive 33
Rickettsia (1)
105 Rickettsia prowazekii str. Madrid E 835
Shigella (5)
106 Shigella boydii CDC 3083-94 BS512 4557
107 Shigella boydii Sb227 4282
108 Shigella dysenteriae Sd197 4502
109 Shigella flexneri 2a str. 2457T 4061
110 Shigella flexneri 5 str. 8401 4115
Vaccinia virus (1)
111 Vaccinia virus NC_006998 223
Variola virus (1)
112 Variola virus NC_001611 197
Vibrio (3)
113 Vibrio cholerae M66-2 3693
114 Vibrio cholerae O1 biovar eltor str. N16961 3835
115 Vibrio cholerae O395 3875
Yellow fever virus (1)
116 Yellow fever virus NC_002031 14
Total 116 316236