VIOLIN Logo
VO Banner
Search: for Help
About
Introduction
Statistics
VIOLIN News
Your VIOLIN
Register or Login
Submission
Tutorial
Vaccine & Components
Vaxquery
Vaxgen
VBLAST
Protegen
VirmugenDB
DNAVaxDB
CanVaxKB
Vaxjo
Vaxvec
Vevax
Huvax
Cov19VaxKB
Host Responses
VaximmutorDB
VIGET
Vaxafe
Vaxar
Vaxism
Vaccine Literature
VO-SciMiner
Litesearch
Vaxmesh
Vaxlert
Vaccine Design
Vaxign2
Vaxign
Community Efforts
Vaccine Ontology
ICoVax 2012
ICoVax 2013
Advisory Committee
Vaccine Society
Vaxperts
VaxPub
VaxCom
VaxLaw
VaxMedia
VaxMeet
VaxFund
VaxCareer
Data Exchange
V-Utilities
VIOLINML
Help & Documents
Publications
Documents
FAQs
Links
Acknowledgements
Disclaimer
Contact Us
UM Logo

HA

Gene Name HA
Sequence Strain (Species/Organism) synthetic construct
NCBI Nucleotide GI 89994009
NCBI Protein GI 89994010
Protein Accession ABD83813.1
Other Database IDs CDD:278910
Taxonomy ID 32630
Gene Strand (Orientation) ?
Protein Name codon-optimized hemagglutinin
Protein pI 6.56
Protein Weight 61265.95
Protein Length 642
Protein Note derived from influenza A virus strain A/goose/Guangdong/1/96(H5N1); GSGD96
DNA Sequence 
>gi|89994009|gb|DQ420166.1| Synthetic construct codon-optimized hemagglutinin (HA) gene, complete cds
ATGGAGAAGATCGTGCTGCTGCTGGCCATCGTGAGCCTGGTGAAGAGCGACCAGATCTGCATCGGCTACC
ACGCCAACAACAGCACCGAGCAGGTGGACACCATCATGGAGAAGAACGTGACCGTGACCCACGCCCAGGA
CATCCTGGAGAAGACCCACAACGGCAAGCTGTGCGACCTGAACGGCGTGAAGCCCCTGATCCTGCGCGAC
TGCAGCGTGGCCGGCTGGCTGCTGGGCAACCCCATGTGCGACGAGTTCATCAACGTGCCCGAGTGGAGCT
ACATCGTGGAGAAGGCCAGCCCCGCCAACGACCTGTGCTACCCCGGCGACTTCAACGACTACGAGGAGCT
GAAGCACCTGCTGAGCCGCACCAACCACTTCGAGAAGATCCAGATCATCCCCAAGAGCAGCTGGAGCAAC
CACGACGCCAGCAGCGGCGTGAGCAGCGCCTGCCCCTACCACGGCCGCAGCAGCTTCTTCCGCAACGTGG
TGTGGCTGATCAAGAAGAACAGCGCCTACCCCACCATCAAGCGCAGCTACAACAACACCAACCAGGAGGA
CCTGCTGGTGCTGTGGGGCATCCACCACCCCAACGACGCCGCCGAGCAGACCAAGCTGTACCAGAACCCC
ACCACCTACATCAGCGTGGGCACCAGCACCCTGAACCAGCGCCTGGTGCCCGAGATCGCCACCCGCCCCA
AGGTGAACGGGCAGAGCGGCCGCATGGAGTTCTTCTGGACCATCCTGAAGCCCAACGACGCCATCAACTT
CGAGAGCAACGGCAACTTCATCGCCCCCGAGTACGCCTACAAGATCGTGAAGAAGGGCGACAGCGCCATC
ATGAAGAGCGAGCTGGAGTACGGCAACTGCAACACCAAGTGCCAGACCCCCATGGGCGCCATCAACAGCA
GCATGCCCTTCCACAACATCCACCCCCTGACCATCGGCGAGTGCCCCAAGTACGTGAAGAGCAACCGCCT
GGTGCTGGCCACCGGCCTGCGCAACACCCCCCAGCGCGAGCGCCGCCGCAAGAAGCGCGGCCTGTTCGGC
GCCATCGCCGGCTTCATCGAGGGCGGCTGGCAGGGCATGGTGGACGGCTGGTACGGGTACCACCACAGCA
ACGAGCAGGGCAGCGGCTACGCCGCCGACAAGGAGAGCACCCAGAAGGCCATCGACGGCGTGACCAACAA
GGTGAACAGCATCATCGACAAGATGAACACCCAGTTCGAGGCCGTGGGCCGCGAGTTCAACAACCTGGAG
CGCCGCATCGAGAACCTGAACAAGCAGATGGAGGACGGCTTCCTGGACGTGTGGACCTACAACGCCGAGC
TGCTGGTGCTGATGGAGAACGAGCGCACCCTGGACTTCCACGACAGCAACGTGAAGAACCTGTACGACAA
GGTGCGCCTGCAGCTGCGCGACAACGCCAAGGAGCTGGGCAACGGCTGCTTCGAGTTCTACCACAAGTGC
GACAACGAGTGCATGGAGAGCGTGAAGAACGGCACCTACGACTACCCCCAGTACAGCGAGGAGGCCCGCC
TGAACCGCGAGGAGATCAGCGGCGTGAAGCTGGAGAGCATGGGCACCTACCAGATCCTGAGCATCTACAG
CACCGTGGCCAGCAGCCTGGCCCTGGCCATCATGGTGGCCGGCCTGAGCCTGTGGATGTGCAGCAACGGC
AGCCTGCAGTGCCGCATCTGCATCTAA
Protein Sequence 
>ABD83813.1 codon-optimized hemagglutinin [synthetic construct]
MEKIVLLLAIVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLNGVKPLILRD
CSVAGWLLGNPMCDEFINVPEWSYIVEKASPANDLCYPGDFNDYEELKHLLSRTNHFEKIQIIPKSSWSN
HDASSGVSSACPYHGRSSFFRNVVWLIKKNSAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNP
TTYISVGTSTLNQRLVPEIATRPKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSAI
MKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNTPQRERRRKKRGLFG
AIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLE
RRIENLNKQMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKC
DNECMESVKNGTYDYPQYSEEARLNREEISGVKLESMGTYQILSIYSTVASSLALAIMVAGLSLWMCSNG
SLQCRICI
Molecule Role Protective antigen
References