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     We have created an eXtensible Markup Language (XML)-based data exchange format VIOLINML for VIOLIN data exchange. The VIOLINML DTD or XML Schema defines VIOLINML. We also ceates a web page in Here to explain the details of the VIOLINML data structure.

     XML uses simple text-based markup to describe the structure and semantics of ordered data, thereby allowing for standardized data formatting and interchange. VIOLINML allows for a portable, system-independent, machine-parseable, and human-readable representation of general vaccine information for a particular pathogen stored in VIOLIN. You can download individual VIOLINML documents below.

Index Pathogen Name Disease Export to XML
1 Actinobacillus pleuropneumoniae porcine pleuropneumonia VIOLINML
2 Adenovirus Respiratory infection VIOLINML
3 Aeromonas hydrophila VIOLINML
4 Aeromonas salmonicida Furunculosis, Bald sea urchin disease VIOLINML
5 African horse sickness virus VIOLINML
6 African Swine Fever Virus African Swine Fever VIOLINML
7 Allergy Allergy VIOLINML
8 Arthritis VIOLINML
9 Atherosclerosis Atherosclerosis, arteriosclerotic vascular disease (ASVD) VIOLINML
10 Avian Encephalomyelitis Virus Avian Encephalomyelitis VIOLINML
11 Avian Paramyxovirus VIOLINML
12 Avian pneumovirus Turkey rhinotracheitis, Avian rhinotracheitis, Swollen head syndrome VIOLINML
13 Avian Polyomavirus Papovavirus, Budgerigar fledgling disease, Psittacine polyomavirus VIOLINML
14 Avian Reovirus Viral Arthritis, Pale Bird Syndrome, Tenosynovitis VIOLINML
15 Babesia bovis Babesiosis, Texas Cattle Fever VIOLINML
16 Babesia canis Piroplasmosis VIOLINML
17 Bacillus anthracis Anthrax VIOLINML
18 Bluetongue virus Bluetongue disesase VIOLINML
19 Bordetella avium Bordetellosis VIOLINML
20 Bordetella bronchiseptica Infectious bronchitis, kennel cough VIOLINML
21 Bordetella pertussis Whooping Cough VIOLINML
22 Borna disease virus VIOLINML
23 Borrelia burgdorferi Lyme Disease VIOLINML
24 Bovine coronavirus VIOLINML
25 Bovine herpesvirus 1 Infectious bovine rhinotracheitis VIOLINML
26 Bovine Leukemia virus VIOLINML
27 Bovine papillomavirus Warts VIOLINML
28 Bovine Parainfluenza 3 Virus (BPIV-3) VIOLINML
29 Bovine Respiratory Syncytial Virus Respiratory Disease VIOLINML
30 Bovine viral diarrhea virus 1 Bovine viral Diarrhea (BVD) VIOLINML
31 Bovine viral diarrhea virus 2 Bovine viral diarrhea VIOLINML
32 Brucella spp. Brucellosis VIOLINML
33 Burkholderia pseudomallei Melioidosis VIOLINML
34 Campylobacter fetus bovine venereal campylobacteriosis (BVC) VIOLINML
35 Campylobacter jejuni Campylobacterosis VIOLINML
36 Canarypox virus Canary Pox VIOLINML
37 Cancer Cancer VIOLINML
38 Canine adenovirus type 1 Fox Encephalitis, Infectious Canine Hepatitis VIOLINML
39 Canine Adenovirus Type 2 VIOLINML
40 Canine coronavirus Intestinal disease VIOLINML
41 Canine distemper virus Canine distemper VIOLINML
42 Canine parainfluenza virus VIOLINML
43 Canine parvovirus Canine parvovirus infection VIOLINML
44 Caprine herpesvirus type 1 (CpHV-1) VIOLINML
45 Chicken Anemia Virus Chicken infectious anemia, Blue wing disease, Anemia dermatitis syndrome, Hemorrhagic aplastic anemi VIOLINML
46 chikungunya virus VIOLINML
47 Chlamydia muridarum VIOLINML
48 Chlamydia trachomatis Chlamydia VIOLINML
49 Chlamydophila abortus Abortion and fetal death VIOLINML
50 Chlamydophila pneumoniae Pneumonia VIOLINML
51 Chlamydophila psittaci Respiratory psittacosis, avian chlamydiosis VIOLINML
52 Classical swine fever virus Classical swine fever, hog cholera VIOLINML
53 Clostridium botulinum Botulism VIOLINML
54 Clostridium perfringens Food poisioning, Gas gangrene VIOLINML
55 Clostridium tetani Tetanus VIOLINML
56 Coccidioides spp. Coccidioidomycosis (California disease, Desert rheumatism, San Joaquin valley fever, and Valley fev VIOLINML
57 Corynebacterium diphtheriae Diphtheria VIOLINML
58 Corynebacterium pseudotuberculosis VIOLINML
59 Coxiella burnetii Q fever VIOLINML
60 Crimean-Congo Haemorrhagic Fever (CCHF) VIOLINML
61 Cryptosporidium parvum Cryptosporidiosis VIOLINML
62 Dengue Virus Dengue Fever VIOLINML
63 Diabetes Diabetes VIOLINML
64 Duck enteritis virus Duck Plague VIOLINML
65 Duck hepatitis virus 1 Duck virus hepatitis (DVH) VIOLINML
66 Eastern Equine Encephalitis Virus Encephalitis VIOLINML
67 Ebola virus Ebola hemorrhagic fever VIOLINML
68 Edwardsiella ictaluri Enteric septicemia of channel catfish (ESC) VIOLINML
69 Edwardsiella tarda VIOLINML
70 Eimeria maxima Coccidiosis VIOLINML
71 Eimeria spp. Coccidiosis VIOLINML
72 Eimeria tenella Hemorrhagic cecal coccidiosis VIOLINML
73 Entamoeba histolytica Amoebiasis VIOLINML
74 Equid herpesvirus Equine Rhinopneumonitis VIOLINML
75 Equine arteritis virus Equine arteritis VIOLINML
76 Equine rotavirus Rotaviral Diarrhea VIOLINML
77 Erysipelothrix rhusiopathiae Erysipelas VIOLINML
78 Escherichia coli Hemorrhagic colitis VIOLINML
79 Experimental autoimmune encephalomyelitis Experimental autoimmune encephalomyelitis (EAE) VIOLINML
80 Experimental autoimmune uveitis Experimental autoimmune uveitis VIOLINML
81 Feline calicivirus Feline Respiratory Infections VIOLINML
82 Feline herpesvirus 1 Feline viral rhinotracheitis VIOLINML
83 Feline immunodeficiency virus Feline AIDS VIOLINML
84 Feline infectious peritonitis virus Feline infectious peritonitis (FIP) VIOLINML
85 Feline leukemia virus Feline leukemia virus infection VIOLINML
86 Feline panleukopenia virus Feline Distemper VIOLINML
87 Flavobacterium columnare Columnaris VIOLINML
88 Foot-and-mouth disease virus Foot-and-mouth disease VIOLINML
89 Fowlpox virus Fowlpox VIOLINML
90 Francisella tularensis Tularemia VIOLINML
91 Gallid herpesvirus 1 Avian infectious laryngotracheitis, Fowl Laryngotracheitis VIOLINML
92 Giardia duodenalis Giardiasis (Beaver fever) VIOLINML
93 Haemophilus influenzae Meningitis VIOLINML
94 Haemophilus parasuis Glasser's disease VIOLINML
95 Haemophilus somnus VIOLINML
96 Hantavirus Hantavirus Pulmonary Syndrome VIOLINML
97 Helicobacter pylori Ulcers VIOLINML
98 Hendra virus Hendra virus disease VIOLINML
99 Hepatitis A virus Hepatitis A VIOLINML
100 Hepatitis B virus Hepatitis B VIOLINML
101 Hepatitis C virus Hepatitis C VIOLINML
102 Hepatitis D virus VIOLINML
103 Hepatitis E virus Hepatitis E VIOLINML
104 Herpes simplex virus type 1 and 2 Herpes VIOLINML
105 Hirame rhabdovirus VIOLINML
106 Human coxsackievirus VIOLINML
107 Human cytomegalovirus VIOLINML
108 Human Immunodeficiency Virus Acquired Immunodeficiency Syndrome (AIDS) VIOLINML
109 Human metapneumovirus Respiratory tract infection VIOLINML
110 Human Papillomavirus HPV infection VIOLINML
111 Human Respiratory Syncytial Virus Respiratory tract disease VIOLINML
112 Infectious Bronchitis Virus (IBV) Infectious Bronchitis VIOLINML
113 Infectious Bursal Disease Virus (IBDV) Infectious Bursal Disease VIOLINML
114 Infectious Hematopoietic Necrosis Virus Infectious hematopoietic necrosis VIOLINML
115 infectious laryngotracheitis virus VIOLINML
116 Infectious pancreatic necrosis virus VIOLINML
117 Infectious salmon anemia virus Infectious Salmon Anemia VIOLINML
118 Influenza virus Influenza (flu) VIOLINML
119 Japanese encephalitis virus Japanese encephalitis VIOLINML
120 Lassa Fever Virus Lassa fever VIOLINML
121 Lawsonia intracellularis Lawsonia intracellularis infection VIOLINML
122 Leishmania amazonensis Leishmaniasis VIOLINML
123 Leishmania donovani Visceral leishmaniasis VIOLINML
124 Leishmania infantum Infantile visceral leishmaniasis VIOLINML
125 Leishmania major Cutaneous leishmaniasis VIOLINML
126 Leptospira spp. Leptospirosis VIOLINML
127 Listeria monocytogenes Listeriosis VIOLINML
128 Lymphocytic choriomeningitis virus Lymphocytic choriomeningitis VIOLINML
129 Mannheimia haemolytica Bovine Respiratory Disease VIOLINML
130 Marburg Virus Hemorrhagic fever VIOLINML
131 Marek's disease virus Marek's disease VIOLINML
132 Measles virus Measles VIOLINML
133 Mink enteritis virus Mink Enteritis VIOLINML
134 Mumps virus Mumps VIOLINML
135 Murine Cytomegalovirus VIOLINML
136 Murine leukemia virus VIOLINML
137 Mycobacterium avium VIOLINML
138 Mycobacterium marinum VIOLINML
139 Mycobacterium tuberculosis Tuberculosis VIOLINML
140 Mycoplasma gallisepticum Chronic respiratory disease VIOLINML
141 Mycoplasma hyopneumoniae Porcine Enzootic Pneumonia VIOLINML
142 Mycoplasma synoviae Respiratory tract disease and synovitis VIOLINML
143 Neisseria meningitidis Meningitis VIOLINML
144 Neospora caninum Neosporosis VIOLINML
145 Newcastle disease virus Newcastle disease VIOLINML
146 Nipah virus Nipah virus disease VIOLINML
147 Orf Virus Orf disease, Sore mouth (Ovine Ecthyma) VIOLINML
148 Parainfluenza virus VIOLINML
149 Pasteurella multocida Pasteurellosis, fowl cholera VIOLINML
150 Pigeonpox virus Pigeon Pox VIOLINML
151 Piscirickettsia salmonis Salmon Rickettsial Disease, Piscirickettsiosis VIOLINML
152 Plasmodium spp. Malaria VIOLINML
153 Poliovirus Polio VIOLINML
154 Porcine circovirus 2 Postweaning multisystemic wasting syndrome VIOLINML
155 Porcine parvovirus SMEDI, reproductive failure VIOLINML
156 Porcine respiratory and reproductive syndrome virus Porcine Reproductive and Respiratory Syndrome (PRRS), Blue-Ear Pig Disease VIOLINML
157 Porcine rotavirus Diarrhea VIOLINML
158 Porphyromonas gulae Canine periodontitis VIOLINML
159 Pseudomonas aeruginosa Pseudomonas aeruginosa infection VIOLINML
160 Pseudorabies virus Aujeszky's disease VIOLINML
161 Psittacid herpesvirus 1 Pacheco's Parrot Disease VIOLINML
162 Rabbit hemorrhagic disease virus Rabbit hemorrhagic disease VIOLINML
163 Rabies virus Rabies VIOLINML
164 Reticuloendotheliosis Virus Tumors, wasting syndrome VIOLINML
165 Ricin toxin of Ricinus communis Ricin poisoning VIOLINML
166 Rickettsia spp Spotted Fever, Typhus VIOLINML
167 Riemerella anatipestifer New duck disease, Infectious serositis, Pasteurella anatipestifer infection VIOLINML
168 Rift Valley Fever virus Rift valley fever VIOLINML
169 rinderpest virus VIOLINML
170 Rotavirus Gastroenteritis VIOLINML
171 Rubella virus Rubella VIOLINML
172 Salmonella spp. Salmonellosis VIOLINML
173 Sarcocystis neurona Equine protozoal myeloencephalitis VIOLINML
174 SARS-CoV Severe Acute Respiratory Syndrome (SARS) VIOLINML
175 Schistosoma japonicum Schistosomiasis VIOLINML
176 Schistosoma mansoni Schistosomiasis VIOLINML
177 Shigella Shigellosis VIOLINML
178 Simian Immunodeficiency Virus Simian AIDS VIOLINML
179 Sindbis virus Encephalitis VIOLINML
180 Staphylococcus aureus Staph infections VIOLINML
181 Streptococcus agalactiae Group B streptococcus (GBS) infection VIOLINML
182 Streptococcus equi Strangles (also equine distemper) VIOLINML
183 Streptococcus pneumoniae Pneumonia VIOLINML
184 Streptococcus pyogenes Group A streptococcal infections, Strep throat, Scarlet fever VIOLINML
185 Streptococcus suis VIOLINML
186 Theileria annulata Theileriosis VIOLINML
187 Theileria parva East Coast Fever VIOLINML
188 Tick-borne Encephalitis Virus (TBEV) Tick-borne Encephalitis VIOLINML
189 Toxoplasma gondii Toxoplasmosis VIOLINML
190 Transmissible gastroenteritis virus Porcine transmissible gastroenteritis VIOLINML
191 Treponema pallidum Syphilis VIOLINML
192 Trichinella spiralis VIOLINML
193 Trichomonas foetus VIOLINML
194 Trypanosoma brucei African trypanosomiasis (African Sleeping Sickness) VIOLINML
195 Trypanosoma cruzi Chagas disease VIOLINML
196 Turkey hemorrhagic enteritis virus Hemorrhagic enteritis VIOLINML
197 Vaccinia virus VIOLINML
198 Varicella-zoster virus chickenpox / shingles VIOLINML
199 Variola virus Smallpox VIOLINML
200 VEE Virus Venezuelan equine encephalitis VIOLINML
201 Vibrio anguillarum (Listonella anguillarum) Vibrosis VIOLINML
202 Vibrio cholerae Cholera VIOLINML
203 Viral haemorrhagic septicaemia virus VIOLINML
204 West Nile virus West Nile fever VIOLINML
205 Western equine encephalomyelitis virus Western equine encephalomyelitis (WEE) VIOLINML
206 Yellow fever virus Yellow fever VIOLINML
207 Yersinia enterocolitica Yersiniosis VIOLINML
208 Yersinia pestis Plague VIOLINML
209 Yersinia pseudotuberculosis Yersiniosis VIOLINML
210 Yersinia ruckeri Enteric redmouth disease VIOLINML

     Provenance: All VIOLINML documents are created on the fly from the data stored in the VIOLIN database.