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     We have created an eXtensible Markup Language (XML)-based data exchange format VIOLINML for VIOLIN data exchange. The VIOLINML DTD or XML Schema defines VIOLINML. We also ceates a web page in Here to explain the details of the VIOLINML data structure.

     XML uses simple text-based markup to describe the structure and semantics of ordered data, thereby allowing for standardized data formatting and interchange. VIOLINML allows for a portable, system-independent, machine-parseable, and human-readable representation of general vaccine information for a particular pathogen stored in VIOLIN. You can download individual VIOLINML documents below.

Index Pathogen Name Disease Export to XML
1 Actinobacillus pleuropneumoniae porcine pleuropneumonia VIOLINML
2 Adenovirus Respiratory infection VIOLINML
3 Aeromonas hydrophila VIOLINML
4 Aeromonas salmonicida Furunculosis, Bald sea urchin disease VIOLINML
5 African Swine Fever Virus African Swine Fever VIOLINML
6 Allergy Allergy VIOLINML
7 Arthritis VIOLINML
8 Atherosclerosis Atherosclerosis, arteriosclerotic vascular disease (ASVD) VIOLINML
9 Avian Encephalomyelitis Virus Avian Encephalomyelitis VIOLINML
10 Avian Paramyxovirus VIOLINML
11 Avian pneumovirus Turkey rhinotracheitis, Avian rhinotracheitis, Swollen head syndrome VIOLINML
12 Avian Polyomavirus Papovavirus, Budgerigar fledgling disease, Psittacine polyomavirus VIOLINML
13 Avian Reovirus Viral Arthritis, Pale Bird Syndrome, Tenosynovitis VIOLINML
14 Babesia bovis Babesiosis, Texas Cattle Fever VIOLINML
15 Babesia canis Piroplasmosis VIOLINML
16 Bacillus anthracis Anthrax VIOLINML
17 Bluetongue virus Bluetongue disesase VIOLINML
18 Bordetella avium Bordetellosis VIOLINML
19 Bordetella bronchiseptica Infectious bronchitis, kennel cough VIOLINML
20 Bordetella pertussis Whooping Cough VIOLINML
21 Borrelia burgdorferi Lyme Disease VIOLINML
22 Bovine coronavirus VIOLINML
23 Bovine herpesvirus 1 Infectious bovine rhinotracheitis VIOLINML
24 Bovine Leukemia virus VIOLINML
25 Bovine papillomavirus Warts VIOLINML
26 Bovine Parainfluenza 3 Virus (BPIV-3) VIOLINML
27 Bovine Respiratory Syncytial Virus Respiratory Disease VIOLINML
28 Bovine viral diarrhea virus 1 Bovine viral Diarrhea (BVD) VIOLINML
29 Bovine viral diarrhea virus 2 Bovine viral diarrhea VIOLINML
30 Brucella spp. Brucellosis VIOLINML
31 Burkholderia pseudomallei Melioidosis VIOLINML
32 Campylobacter fetus bovine venereal campylobacteriosis (BVC) VIOLINML
33 Campylobacter jejuni Campylobacterosis VIOLINML
34 Canarypox virus Canary Pox VIOLINML
35 Cancer Cancer VIOLINML
36 Canine adenovirus type 1 Fox Encephalitis, Infectious Canine Hepatitis VIOLINML
37 Canine Adenovirus Type 2 VIOLINML
38 Canine coronavirus Intestinal disease VIOLINML
39 Canine distemper virus Canine distemper VIOLINML
40 Canine parainfluenza virus VIOLINML
41 Canine parvovirus Canine parvovirus infection VIOLINML
42 Chicken Anemia Virus Chicken infectious anemia, Blue wing disease, Anemia dermatitis syndrome, Hemorrhagic aplastic anemi VIOLINML
43 Chlamydia muridarum VIOLINML
44 Chlamydia trachomatis Chlamydia VIOLINML
45 Chlamydophila abortus Abortion and fetal death VIOLINML
46 Chlamydophila pneumoniae Pneumonia VIOLINML
47 Chlamydophila psittaci Respiratory psittacosis, avian chlamydiosis VIOLINML
48 Classical swine fever virus Classical swine fever, hog cholera VIOLINML
49 Clostridium botulinum Botulism VIOLINML
50 Clostridium perfringens Food poisioning, Gas gangrene VIOLINML
51 Clostridium tetani Tetanus VIOLINML
52 Coccidioides spp. Coccidioidomycosis (California disease, Desert rheumatism, San Joaquin valley fever, and Valley fev VIOLINML
53 Corynebacterium diphtheriae Diphtheria VIOLINML
54 Coxiella burnetii Q fever VIOLINML
55 Cryptosporidium parvum Cryptosporidiosis VIOLINML
56 Dengue Virus Dengue Fever VIOLINML
57 Diabetes Diabetes VIOLINML
58 Duck enteritis virus Duck Plague VIOLINML
59 Duck hepatitis virus 1 Duck virus hepatitis (DVH) VIOLINML
60 Eastern Equine Encephalitis Virus Encephalitis VIOLINML
61 Ebola virus Ebola hemorrhagic fever VIOLINML
62 Edwardsiella ictaluri Enteric septicemia of channel catfish (ESC) VIOLINML
63 Edwardsiella tarda VIOLINML
64 Eimeria maxima Coccidiosis VIOLINML
65 Eimeria spp. Coccidiosis VIOLINML
66 Eimeria tenella Hemorrhagic cecal coccidiosis VIOLINML
67 Entamoeba histolytica Amoebiasis VIOLINML
68 Equid herpesvirus Equine Rhinopneumonitis VIOLINML
69 Equine arteritis virus Equine arteritis VIOLINML
70 Equine rotavirus Rotaviral Diarrhea VIOLINML
71 Erysipelothrix rhusiopathiae Erysipelas VIOLINML
72 Escherichia coli Hemorrhagic colitis VIOLINML
73 Experimental autoimmune encephalomyelitis Experimental autoimmune encephalomyelitis (EAE) VIOLINML
74 Experimental autoimmune uveitis Experimental autoimmune uveitis VIOLINML
75 Feline calicivirus Feline Respiratory Infections VIOLINML
76 Feline herpesvirus 1 Feline viral rhinotracheitis VIOLINML
77 Feline immunodeficiency virus Feline AIDS VIOLINML
78 Feline infectious peritonitis virus Feline infectious peritonitis (FIP) VIOLINML
79 Feline leukemia virus Feline leukemia virus infection VIOLINML
80 Feline panleukopenia virus Feline Distemper VIOLINML
81 Flavobacterium columnare Columnaris VIOLINML
82 Foot-and-mouth disease virus Foot-and-mouth disease VIOLINML
83 Fowlpox virus Fowlpox VIOLINML
84 Francisella tularensis Tularemia VIOLINML
85 Gallid herpesvirus 1 Avian infectious laryngotracheitis, Fowl Laryngotracheitis VIOLINML
86 Giardia duodenalis Giardiasis (Beaver fever) VIOLINML
87 Haemophilus influenzae Meningitis VIOLINML
88 Haemophilus parasuis Glasser's disease VIOLINML
89 Haemophilus somnus VIOLINML
90 Hantavirus Hantavirus Pulmonary Syndrome VIOLINML
91 Helicobacter pylori Ulcers VIOLINML
92 Hendra virus Hendra virus disease VIOLINML
93 Hepatitis A virus Hepatitis A VIOLINML
94 Hepatitis B virus Hepatitis B VIOLINML
95 Hepatitis C virus Hepatitis C VIOLINML
96 Hepatitis D virus VIOLINML
97 Hepatitis E virus Hepatitis E VIOLINML
98 Herpes simplex virus type 1 and 2 Herpes VIOLINML
99 Hirame rhabdovirus VIOLINML
100 Human coxsackievirus VIOLINML
101 Human cytomegalovirus VIOLINML
102 Human Immunodeficiency Virus Acquired Immunodeficiency Syndrome (AIDS) VIOLINML
103 Human metapneumovirus Respiratory tract infection VIOLINML
104 Human Papillomavirus HPV infection VIOLINML
105 Human Respiratory Syncytial Virus Respiratory tract disease VIOLINML
106 Infectious Bronchitis Virus (IBV) Infectious Bronchitis VIOLINML
107 Infectious Bursal Disease Virus (IBDV) Infectious Bursal Disease VIOLINML
108 Infectious Hematopoietic Necrosis Virus Infectious hematopoietic necrosis VIOLINML
109 Infectious pancreatic necrosis virus VIOLINML
110 Infectious salmon anemia virus Infectious Salmon Anemia VIOLINML
111 Influenza virus Influenza (flu) VIOLINML
112 Japanese encephalitis virus Japanese encephalitis VIOLINML
113 Lassa Fever Virus Lassa fever VIOLINML
114 Lawsonia intracellularis Lawsonia intracellularis infection VIOLINML
115 Leishmania amazonensis Leishmaniasis VIOLINML
116 Leishmania donovani Visceral leishmaniasis VIOLINML
117 Leishmania infantum Infantile visceral leishmaniasis VIOLINML
118 Leishmania major Cutaneous leishmaniasis VIOLINML
119 Leptospira spp. Leptospirosis VIOLINML
120 Listeria monocytogenes Listeriosis VIOLINML
121 Lymphocytic choriomeningitis virus Lymphocytic choriomeningitis VIOLINML
122 Mannheimia haemolytica Bovine Respiratory Disease VIOLINML
123 Marburg Virus Hemorrhagic fever VIOLINML
124 Marek's disease virus Marek's disease VIOLINML
125 Measles virus Measles VIOLINML
126 Mink enteritis virus Mink Enteritis VIOLINML
127 Mumps virus Mumps VIOLINML
128 Murine Cytomegalovirus VIOLINML
129 Murine leukemia virus VIOLINML
130 Mycobacterium avium VIOLINML
131 Mycobacterium marinum VIOLINML
132 Mycobacterium tuberculosis Tuberculosis VIOLINML
133 Mycoplasma gallisepticum Chronic respiratory disease VIOLINML
134 Mycoplasma hyopneumoniae Porcine Enzootic Pneumonia VIOLINML
135 Mycoplasma synoviae Respiratory tract disease and synovitis VIOLINML
136 Neisseria meningitidis Meningitis VIOLINML
137 Neospora caninum Neosporosis VIOLINML
138 Newcastle disease virus Newcastle disease VIOLINML
139 Nipah virus Nipah virus disease VIOLINML
140 Orf Virus Orf disease, Sore mouth (Ovine Ecthyma) VIOLINML
141 Parainfluenza virus VIOLINML
142 Pasteurella multocida Pasteurellosis, fowl cholera VIOLINML
143 Pigeonpox virus Pigeon Pox VIOLINML
144 Piscirickettsia salmonis Salmon Rickettsial Disease, Piscirickettsiosis VIOLINML
145 Plasmodium spp. Malaria VIOLINML
146 Poliovirus Polio VIOLINML
147 Porcine circovirus 2 Postweaning multisystemic wasting syndrome VIOLINML
148 Porcine parvovirus SMEDI, reproductive failure VIOLINML
149 Porcine respiratory and reproductive syndrome virus Porcine Reproductive and Respiratory Syndrome (PRRS), Blue-Ear Pig Disease VIOLINML
150 Porcine rotavirus Diarrhea VIOLINML
151 Porphyromonas gulae Canine periodontitis VIOLINML
152 Pseudomonas aeruginosa Pseudomonas aeruginosa infection VIOLINML
153 Pseudorabies virus Aujeszky's disease VIOLINML
154 Psittacid herpesvirus 1 Pacheco's Parrot Disease VIOLINML
155 Rabbit hemorrhagic disease virus Rabbit hemorrhagic disease VIOLINML
156 Rabies virus Rabies VIOLINML
157 Reticuloendotheliosis Virus Tumors, wasting syndrome VIOLINML
158 Ricin toxin of Ricinus communis Ricin poisoning VIOLINML
159 Rickettsia spp Spotted Fever, Typhus VIOLINML
160 Riemerella anatipestifer New duck disease, Infectious serositis, Pasteurella anatipestifer infection VIOLINML
161 Rift Valley Fever virus Rift valley fever VIOLINML
162 Rotavirus Gastroenteritis VIOLINML
163 Rubella virus Rubella VIOLINML
164 Salmonella spp. Salmonellosis VIOLINML
165 Sarcocystis neurona Equine protozoal myeloencephalitis VIOLINML
166 SARS-CoV Severe Acute Respiratory Syndrome (SARS) VIOLINML
167 Schistosoma japonicum Schistosomiasis VIOLINML
168 Schistosoma mansoni Schistosomiasis VIOLINML
169 Shigella Shigellosis VIOLINML
170 Simian Immunodeficiency Virus Simian AIDS VIOLINML
171 Sindbis virus Encephalitis VIOLINML
172 Staphylococcus aureus Staph infections VIOLINML
173 Streptococcus agalactiae Group B streptococcus (GBS) infection VIOLINML
174 Streptococcus equi Strangles (also equine distemper) VIOLINML
175 Streptococcus pneumoniae Pneumonia VIOLINML
176 Streptococcus pyogenes Group A streptococcal infections, Strep throat, Scarlet fever VIOLINML
177 Theileria annulata Theileriosis VIOLINML
178 Theileria parva East Coast Fever VIOLINML
179 Tick-borne Encephalitis Virus (TBEV) Tick-borne Encephalitis VIOLINML
180 Toxoplasma gondii Toxoplasmosis VIOLINML
181 Transmissible gastroenteritis virus Porcine transmissible gastroenteritis VIOLINML
182 Treponema pallidum Syphilis VIOLINML
183 Trichomonas foetus VIOLINML
184 Trypanosoma brucei African trypanosomiasis (African Sleeping Sickness) VIOLINML
185 Trypanosoma cruzi Chagas disease VIOLINML
186 Turkey hemorrhagic enteritis virus Hemorrhagic enteritis VIOLINML
187 Vaccinia virus VIOLINML
188 Varicella-zoster virus chickenpox / shingles VIOLINML
189 Variola virus Smallpox VIOLINML
190 VEE Virus Venezuelan equine encephalitis VIOLINML
191 Vibrio anguillarum (Listonella anguillarum) Vibrosis VIOLINML
192 Vibrio cholerae Cholera VIOLINML
193 Viral haemorrhagic septicaemia virus VIOLINML
194 West Nile virus West Nile fever VIOLINML
195 Western equine encephalomyelitis virus Western equine encephalomyelitis (WEE) VIOLINML
196 Yellow fever virus Yellow fever VIOLINML
197 Yersinia enterocolitica Yersiniosis VIOLINML
198 Yersinia pestis Plague VIOLINML
199 Yersinia pseudotuberculosis Yersiniosis VIOLINML
200 Yersinia ruckeri Enteric redmouth disease VIOLINML

     Provenance: All VIOLINML documents are created on the fly from the data stored in the VIOLIN database.