We have created an eXtensible Markup Language (XML)-based data exchange format VIOLINML for VIOLIN data exchange. The VIOLINML DTD or XML Schema defines VIOLINML. We also ceates a web page in Here to explain the details of the VIOLINML data structure.
| Index |
Pathogen Name |
Disease |
Export to XML |
| 1 |
Actinobacillus pleuropneumoniae |
porcine pleuropneumonia |
VIOLINML |
| 2 |
Adenovirus |
Respiratory infection |
VIOLINML |
| 3 |
Aeromonas hydrophila |
|
VIOLINML |
| 4 |
Aeromonas salmonicida |
Furunculosis, Bald sea urchin disease |
VIOLINML |
| 5 |
Allergy |
Allergy |
VIOLINML |
| 6 |
Atherosclerosis |
Atherosclerosis, arteriosclerotic vascular disease (ASVD) |
VIOLINML |
| 7 |
Avian Encephalomyelitis Virus |
Avian Encephalomyelitis |
VIOLINML |
| 8 |
Avian Paramyxovirus |
|
VIOLINML |
| 9 |
Avian pneumovirus |
Turkey rhinotracheitis, Avian rhinotracheitis, Swollen head syndrome |
VIOLINML |
| 10 |
Avian Polyomavirus |
Papovavirus, Budgerigar fledgling disease, Psittacine polyomavirus |
VIOLINML |
| 11 |
Avian Reovirus |
Viral Arthritis, Pale Bird Syndrome, Tenosynovitis |
VIOLINML |
| 12 |
Babesia bovis |
Babesiosis, Texas Cattle Fever |
VIOLINML |
| 13 |
Babesia canis |
Piroplasmosis |
VIOLINML |
| 14 |
Bacillus anthracis |
Anthrax |
VIOLINML |
| 15 |
Bluetongue virus |
Bluetongue disesase |
VIOLINML |
| 16 |
Bordetella avium |
Bordetellosis |
VIOLINML |
| 17 |
Bordetella bronchiseptica |
Infectious bronchitis, kennel cough |
VIOLINML |
| 18 |
Bordetella pertussis |
Whooping Cough |
VIOLINML |
| 19 |
Borrelia burgdorferi |
Lyme Disease |
VIOLINML |
| 20 |
Bovine coronavirus |
|
VIOLINML |
| 21 |
Bovine herpesvirus 1 |
Infectious bovine rhinotracheitis |
VIOLINML |
| 22 |
Bovine Leukemia virus |
|
VIOLINML |
| 23 |
Bovine papillomavirus |
Warts |
VIOLINML |
| 24 |
Bovine Parainfluenza 3 Virus (BPIV-3) |
|
VIOLINML |
| 25 |
Bovine Respiratory Syncytial Virus |
Respiratory Disease |
VIOLINML |
| 26 |
Bovine viral diarrhea virus 1 |
Bovine viral Diarrhea (BVD) |
VIOLINML |
| 27 |
Brucella spp. |
Brucellosis |
VIOLINML |
| 28 |
Burkholderia pseudomallei |
Melioidosis |
VIOLINML |
| 29 |
Campylobacter fetus |
bovine venereal campylobacteriosis (BVC) |
VIOLINML |
| 30 |
Campylobacter jejuni |
Campylobacterosis |
VIOLINML |
| 31 |
Canarypox virus |
Canary Pox |
VIOLINML |
| 32 |
Cancer |
Cancer |
VIOLINML |
| 33 |
Canine adenovirus type 1 |
Fox Encephalitis, Infectious Canine Hepatitis |
VIOLINML |
| 34 |
Canine Adenovirus Type 2 |
|
VIOLINML |
| 35 |
Canine coronavirus |
|
VIOLINML |
| 36 |
Canine distemper virus |
Canine distemper |
VIOLINML |
| 37 |
Canine parainfluenza virus |
|
VIOLINML |
| 38 |
Canine parvovirus |
Canine parvovirus infection |
VIOLINML |
| 39 |
Chicken Anemia Virus |
Chicken infectious anemia, Blue wing disease, Anemia dermatitis syndrome, Hemorrhagic aplastic anemi |
VIOLINML |
| 40 |
Chlamydia muridarum |
|
VIOLINML |
| 41 |
Chlamydia trachomatis |
Chlamydia |
VIOLINML |
| 42 |
Chlamydophila abortus |
Abortion and fetal death |
VIOLINML |
| 43 |
Chlamydophila pneumoniae |
Pneumonia |
VIOLINML |
| 44 |
Chlamydophila psittaci |
Respiratory psittacosis, avian chlamydiosis |
VIOLINML |
| 45 |
Classical swine fever virus |
Classical swine fever |
VIOLINML |
| 46 |
Clostridium botulinum |
Botulism |
VIOLINML |
| 47 |
Clostridium perfringens |
Food poisioning, Gas gangrene |
VIOLINML |
| 48 |
Clostridium tetani |
Tetanus |
VIOLINML |
| 49 |
Coccidioides spp. |
Coccidioidomycosis (California disease, Desert rheumatism, San Joaquin valley fever, and Valley fev |
VIOLINML |
| 50 |
Corynebacterium diphtheriae |
Diphtheria |
VIOLINML |
| 51 |
Coxiella burnetii |
Q fever |
VIOLINML |
| 52 |
Cryptosporidium parvum |
Cryptosporidiosis |
VIOLINML |
| 53 |
Dengue Virus |
Dengue Fever |
VIOLINML |
| 54 |
Duck enteritis virus |
Duck Plague |
VIOLINML |
| 55 |
Duck hepatitis virus 1 |
Duck virus hepatitis (DVH) |
VIOLINML |
| 56 |
Eastern Equine Encephalitis Virus |
Encephalitis |
VIOLINML |
| 57 |
Ebola virus |
Ebola hemorrhagic fever |
VIOLINML |
| 58 |
Edwardsiella ictaluri |
Enteric septicemia of channel catfish (ESC) |
VIOLINML |
| 59 |
Edwardsiella tarda |
|
VIOLINML |
| 60 |
Eimeria maxima |
Coccidiosis |
VIOLINML |
| 61 |
Eimeria spp. |
Coccidiosis |
VIOLINML |
| 62 |
Eimeria tenella |
Hemorrhagic cecal coccidiosis |
VIOLINML |
| 63 |
Entamoeba histolytica |
Amoebiasis |
VIOLINML |
| 64 |
Equid herpesvirus |
Equine Rhinopneumonitis |
VIOLINML |
| 65 |
Equine arteritis virus |
Equine arteritis |
VIOLINML |
| 66 |
Equine rotavirus |
Rotaviral Diarrhea |
VIOLINML |
| 67 |
Erysipelothrix rhusiopathiae |
Erysipelas |
VIOLINML |
| 68 |
Escherichia coli |
Hemorrhagic colitis |
VIOLINML |
| 69 |
Feline calicivirus |
Feline Respiratory Infections |
VIOLINML |
| 70 |
Feline herpesvirus 1 |
Feline viral rhinotracheitis |
VIOLINML |
| 71 |
Feline immunodeficiency virus |
Feline AIDS |
VIOLINML |
| 72 |
Feline infectious peritonitis virus |
Feline infectious peritonitis (FIP) |
VIOLINML |
| 73 |
Feline leukemia virus |
Feline leukemia virus infection |
VIOLINML |
| 74 |
Feline panleukopenia virus |
Feline Distemper |
VIOLINML |
| 75 |
Flavobacterium columnare |
Columnaris |
VIOLINML |
| 76 |
Foot-and-mouth disease virus |
Foot-and-mouth disease |
VIOLINML |
| 77 |
Fowlpox virus |
Fowlpox |
VIOLINML |
| 78 |
Francisella tularensis |
Tularemia |
VIOLINML |
| 79 |
Gallid herpesvirus 1 |
Avian infectious laryngotracheitis, Fowl Laryngotracheitis |
VIOLINML |
| 80 |
Giardia duodenalis |
Giardiasis (Beaver fever) |
VIOLINML |
| 81 |
Haemophilus influenzae |
Meningitis |
VIOLINML |
| 82 |
Haemophilus parasuis |
Glasser's disease |
VIOLINML |
| 83 |
Haemophilus somnus |
|
VIOLINML |
| 84 |
Hantavirus |
Hantavirus Pulmonary Syndrome |
VIOLINML |
| 85 |
Helicobacter pylori |
Ulcers |
VIOLINML |
| 86 |
Hendra virus |
Hendra virus disease |
VIOLINML |
| 87 |
Hepatitis A virus |
Hepatitis A |
VIOLINML |
| 88 |
Hepatitis B virus |
Hepatitis B |
VIOLINML |
| 89 |
Herpes simplex virus type 1 and 2 |
Herpes |
VIOLINML |
| 90 |
Human Immunodeficiency Virus |
Acquired Immunodeficiency Syndrome (AIDS) |
VIOLINML |
| 91 |
Human metapneumovirus |
Respiratory tract infection |
VIOLINML |
| 92 |
Human Papillomavirus |
HPV infection |
VIOLINML |
| 93 |
Human Respiratory Syncytial Virus |
Respiratory tract disease |
VIOLINML |
| 94 |
Infectious Bronchitis Virus (IBV) |
Infectious Bronchitis |
VIOLINML |
| 95 |
Infectious Bursal Disease Virus (IBDV) |
Infectious Bursal Disease |
VIOLINML |
| 96 |
Infectious Hematopoietic Necrosis Virus |
Infectious hematopoietic necrosis |
VIOLINML |
| 97 |
Infectious salmon anemia virus |
Infectious Salmon Anemia |
VIOLINML |
| 98 |
Influenza virus |
Influenza (flu) |
VIOLINML |
| 99 |
Japanese encephalitis virus |
Japanese encephalitis |
VIOLINML |
| 100 |
Lassa Fever Virus |
Lassa fever |
VIOLINML |
| 101 |
Lawsonia intracellularis |
Lawsonia intracellularis infection |
VIOLINML |
| 102 |
Leishmania amazonensis |
Leishmaniasis |
VIOLINML |
| 103 |
Leishmania donovani |
Visceral leishmaniasis |
VIOLINML |
| 104 |
Leishmania infantum |
Infantile visceral leishmaniasis |
VIOLINML |
| 105 |
Leishmania major |
Cutaneous leishmaniasis |
VIOLINML |
| 106 |
Leptospira spp. |
Leptospirosis |
VIOLINML |
| 107 |
Listeria monocytogenes |
Listeriosis |
VIOLINML |
| 108 |
Mannheimia haemolytica |
Bovine Respiratory Disease |
VIOLINML |
| 109 |
Marburg Virus |
Hemorrhagic fever |
VIOLINML |
| 110 |
Marek's disease virus |
Marek's disease |
VIOLINML |
| 111 |
Measles virus |
Measles |
VIOLINML |
| 112 |
Mink enteritis virus |
Mink Enteritis |
VIOLINML |
| 113 |
Mumps virus |
Mumps |
VIOLINML |
| 114 |
Mycobacterium avium |
|
VIOLINML |
| 115 |
Mycobacterium tuberculosis |
Tuberculosis |
VIOLINML |
| 116 |
Mycoplasma gallisepticum |
Chronic respiratory disease |
VIOLINML |
| 117 |
Mycoplasma hyopneumoniae |
Porcine Enzootic Pneumonia |
VIOLINML |
| 118 |
Mycoplasma synoviae |
Respiratory tract disease and synovitis |
VIOLINML |
| 119 |
Neisseria meningitidis |
Meningitis |
VIOLINML |
| 120 |
Neospora caninum |
Neosporosis |
VIOLINML |
| 121 |
Newcastle disease virus |
Newcastle disease |
VIOLINML |
| 122 |
Nipah virus |
Nipah virus disease |
VIOLINML |
| 123 |
Orf Virus |
Orf disease, Sore mouth (Ovine Ecthyma) |
VIOLINML |
| 124 |
Pasteurella multocida |
Pasteurellosis, fowl cholera |
VIOLINML |
| 125 |
Pigeonpox virus |
Pigeon Pox |
VIOLINML |
| 126 |
Piscirickettsia salmonis |
Salmon Rickettsial Disease, Piscirickettsiosis |
VIOLINML |
| 127 |
Plasmodium spp. |
Malaria |
VIOLINML |
| 128 |
Poliovirus |
Polio |
VIOLINML |
| 129 |
Porcine circovirus 2 |
Postweaning multisystemic wasting syndrome |
VIOLINML |
| 130 |
Porcine parvovirus |
SMEDI, reproductive failure |
VIOLINML |
| 131 |
Porcine respiratory and reproductive syndrome virus |
Porcine Reproductive and Respiratory Syndrome (PRRS), Blue-Ear Pig Disease |
VIOLINML |
| 132 |
Porcine rotavirus |
Diarrhea |
VIOLINML |
| 133 |
Porphyromonas gulae |
Canine periodontitis |
VIOLINML |
| 134 |
Pseudomonas aeruginosa |
Pseudomonas aeruginosa infection |
VIOLINML |
| 135 |
Pseudorabies virus |
Aujeszky's disease |
VIOLINML |
| 136 |
Psittacid herpesvirus 1 |
Pacheco's Parrot Disease |
VIOLINML |
| 137 |
Rabies virus |
Rabies |
VIOLINML |
| 138 |
Ricin toxin of Ricinus communis |
Ricin poisoning |
VIOLINML |
| 139 |
Rickettsia spp |
|
VIOLINML |
| 140 |
Riemerella anatipestifer |
New duck disease, Infectious serositis, Pasteurella anatipestifer infection |
VIOLINML |
| 141 |
Rift Valley Fever virus |
Rift valley fever |
VIOLINML |
| 142 |
Rotavirus |
Gastroenteritis |
VIOLINML |
| 143 |
Rubella virus |
Rubella |
VIOLINML |
| 144 |
Salmonella spp. |
Salmonellosis |
VIOLINML |
| 145 |
Sarcocystis neurona |
Equine protozoal myeloencephalitis |
VIOLINML |
| 146 |
SARS-CoV |
Severe Acute Respiratory Syndrome (SARS) |
VIOLINML |
| 147 |
Shigella |
Shigellosis |
VIOLINML |
| 148 |
Simian Immunodeficiency Virus |
Simian AIDS |
VIOLINML |
| 149 |
Staphylococcus aureus |
Staph infections |
VIOLINML |
| 150 |
Streptococcus agalactiae |
Group B streptococcus (GBS) infection |
VIOLINML |
| 151 |
Streptococcus equi |
Strangles (also equine distemper) |
VIOLINML |
| 152 |
Streptococcus pneumoniae |
Pneumonia |
VIOLINML |
| 153 |
Streptococcus pyogenes |
Group A streptococcal infections, Strep throat, Scarlet fever |
VIOLINML |
| 154 |
Theileria annulata |
Theileriosis |
VIOLINML |
| 155 |
Theileria parva |
East Coast Fever |
VIOLINML |
| 156 |
Tick-borne Encephalitis Virus (TBEV) |
Tick-borne Encephalitis |
VIOLINML |
| 157 |
Toxoplasma gondii |
Toxoplasmosis |
VIOLINML |
| 158 |
Transmissible gastroenteritis virus |
Porcine transmissible gastroenteritis |
VIOLINML |
| 159 |
Treponema pallidum |
Syphilis |
VIOLINML |
| 160 |
Trichomonas foetus |
|
VIOLINML |
| 161 |
Trypanosoma brucei |
African trypanosomiasis (African Sleeping Sickness) |
VIOLINML |
| 162 |
Trypanosoma cruzi |
Chagas disease |
VIOLINML |
| 163 |
Turkey hemorrhagic enteritis virus |
Hemorrhagic enteritis |
VIOLINML |
| 164 |
Varicella-zoster virus |
chickenpox / shingles |
VIOLINML |
| 165 |
Variola virus |
Smallpox |
VIOLINML |
| 166 |
VEE Virus |
Venezuelan equine encephalitis |
VIOLINML |
| 167 |
Vibrio anguillarum (Listonella anguillarum) |
Vibrosis |
VIOLINML |
| 168 |
Vibrio cholerae |
Cholera |
VIOLINML |
| 169 |
West Nile virus |
West Nile fever |
VIOLINML |
| 170 |
Western equine encephalomyelitis virus |
Western equine encephalomyelitis (WEE) |
VIOLINML |
| 171 |
Yellow fever virus |
Yellow fever |
VIOLINML |
| 172 |
Yersinia enterocolitica |
|
VIOLINML |
| 173 |
Yersinia pestis |
Plague |
VIOLINML |
| 174 |
Yersinia pseudotuberculosis |
Yersiniosis |
VIOLINML |
| 175 |
Yersinia ruckeri |
Enteric redmouth disease |
VIOLINML |
