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VIOLINML

     We have created an eXtensible Markup Language (XML)-based data exchange format VIOLINML for VIOLIN data exchange. The VIOLINML DTD or XML Schema defines VIOLINML. We also ceates a web page in Here to explain the details of the VIOLINML data structure.

     XML uses simple text-based markup to describe the structure and semantics of ordered data, thereby allowing for standardized data formatting and interchange. VIOLINML allows for a portable, system-independent, machine-parseable, and human-readable representation of general vaccine information for a particular pathogen stored in VIOLIN. You can download individual VIOLINML documents below.

Index Pathogen Name Disease Export to XML
1 Actinobacillus pleuropneumoniae porcine pleuropneumonia VIOLINML
2 Adenovirus Respiratory infection VIOLINML
3 Aeromonas hydrophila VIOLINML
4 Aeromonas salmonicida Furunculosis, Bald sea urchin disease VIOLINML
5 African horse sickness virus VIOLINML
6 African Swine Fever Virus African Swine Fever VIOLINML
7 Allergy Allergy VIOLINML
8 Arthritis VIOLINML
9 Atherosclerosis Atherosclerosis, arteriosclerotic vascular disease (ASVD) VIOLINML
10 Avian Encephalomyelitis Virus Avian Encephalomyelitis VIOLINML
11 Avian Paramyxovirus VIOLINML
12 Avian pneumovirus Turkey rhinotracheitis, Avian rhinotracheitis, Swollen head syndrome VIOLINML
13 Avian Polyomavirus Papovavirus, Budgerigar fledgling disease, Psittacine polyomavirus VIOLINML
14 Avian Reovirus Viral Arthritis, Pale Bird Syndrome, Tenosynovitis VIOLINML
15 Babesia bovis Babesiosis, Texas Cattle Fever VIOLINML
16 Babesia canis Piroplasmosis VIOLINML
17 Bacillus anthracis Anthrax VIOLINML
18 Bifidobacterium bifidum PRL2010 VIOLINML
19 Bluetongue virus Bluetongue disesase VIOLINML
20 Bordetella avium Bordetellosis VIOLINML
21 Bordetella bronchiseptica Infectious bronchitis, kennel cough VIOLINML
22 Bordetella pertussis Whooping Cough VIOLINML
23 Borna disease virus VIOLINML
24 Borrelia burgdorferi Lyme Disease VIOLINML
25 Bovine coronavirus VIOLINML
26 Bovine herpesvirus 1 Infectious bovine rhinotracheitis VIOLINML
27 Bovine Leukemia virus VIOLINML
28 Bovine papillomavirus Warts VIOLINML
29 Bovine Parainfluenza 3 Virus (BPIV-3) VIOLINML
30 Bovine Respiratory Syncytial Virus Respiratory Disease VIOLINML
31 Bovine viral diarrhea virus 1 Bovine viral Diarrhea (BVD) VIOLINML
32 Bovine viral diarrhea virus 2 Bovine viral diarrhea VIOLINML
33 Brucella spp. Brucellosis VIOLINML
34 Burkholderia pseudomallei Melioidosis VIOLINML
35 Campylobacter fetus bovine venereal campylobacteriosis (BVC) VIOLINML
36 Campylobacter jejuni Campylobacterosis VIOLINML
37 Canarypox virus Canary Pox VIOLINML
38 Cancer Cancer VIOLINML
39 Canine adenovirus type 1 Fox Encephalitis, Infectious Canine Hepatitis VIOLINML
40 Canine Adenovirus Type 2 VIOLINML
41 Canine coronavirus Intestinal disease VIOLINML
42 Canine distemper virus Canine distemper VIOLINML
43 Canine parainfluenza virus VIOLINML
44 Canine parvovirus Canine parvovirus infection VIOLINML
45 Caprine herpesvirus type 1 (CpHV-1) VIOLINML
46 Chicken Anemia Virus Chicken infectious anemia, Blue wing disease, Anemia dermatitis syndrome, Hemorrhagic aplastic anemi VIOLINML
47 chikungunya virus VIOLINML
48 Chlamydia muridarum VIOLINML
49 Chlamydia trachomatis Chlamydia VIOLINML
50 Chlamydophila abortus Abortion and fetal death VIOLINML
51 Chlamydophila pneumoniae Pneumonia VIOLINML
52 Chlamydophila psittaci Respiratory psittacosis, avian chlamydiosis VIOLINML
53 Classical swine fever virus Classical swine fever, hog cholera VIOLINML
54 Clostridium botulinum Botulism VIOLINML
55 Clostridium perfringens Food poisioning, Gas gangrene VIOLINML
56 Clostridium tetani Tetanus VIOLINML
57 Coccidioides spp. Coccidioidomycosis (California disease, Desert rheumatism, San Joaquin valley fever, and Valley fev VIOLINML
58 Corynebacterium diphtheriae Diphtheria VIOLINML
59 Corynebacterium pseudotuberculosis VIOLINML
60 Coxiella burnetii Q fever VIOLINML
61 Crimean-Congo Haemorrhagic Fever (CCHF) VIOLINML
62 Cryptosporidium parvum Cryptosporidiosis VIOLINML
63 Dengue Virus Dengue Fever VIOLINML
64 Determination of Amino Acid Composition VIOLINML
65 Diabetes Diabetes VIOLINML
66 Duck enteritis virus Duck Plague VIOLINML
67 Duck hepatitis virus 1 Duck virus hepatitis (DVH) VIOLINML
68 Eastern Equine Encephalitis Virus Encephalitis VIOLINML
69 Ebola virus Ebola hemorrhagic fever VIOLINML
70 Edwardsiella ictaluri Enteric septicemia of channel catfish (ESC) VIOLINML
71 Edwardsiella tarda VIOLINML
72 Eimeria maxima Coccidiosis VIOLINML
73 Eimeria spp. Coccidiosis VIOLINML
74 Eimeria tenella Hemorrhagic cecal coccidiosis VIOLINML
75 Entamoeba histolytica Amoebiasis VIOLINML
76 Equid herpesvirus Equine Rhinopneumonitis VIOLINML
77 Equine arteritis virus Equine arteritis VIOLINML
78 Equine rotavirus Rotaviral Diarrhea VIOLINML
79 Erysipelothrix rhusiopathiae Erysipelas VIOLINML
80 Escherichia coli Hemorrhagic colitis VIOLINML
81 Experimental autoimmune encephalomyelitis Experimental autoimmune encephalomyelitis (EAE) VIOLINML
82 Experimental autoimmune uveitis Experimental autoimmune uveitis VIOLINML
83 Feline calicivirus Feline Respiratory Infections VIOLINML
84 Feline herpesvirus 1 Feline viral rhinotracheitis VIOLINML
85 Feline immunodeficiency virus Feline AIDS VIOLINML
86 Feline infectious peritonitis virus Feline infectious peritonitis (FIP) VIOLINML
87 Feline leukemia virus Feline leukemia virus infection VIOLINML
88 Feline panleukopenia virus Feline Distemper VIOLINML
89 Flavobacterium columnare Columnaris VIOLINML
90 Foot-and-mouth disease virus Foot-and-mouth disease VIOLINML
91 Fowlpox virus Fowlpox VIOLINML
92 Francisella tularensis Tularemia VIOLINML
93 Gallid herpesvirus 1 Avian infectious laryngotracheitis, Fowl Laryngotracheitis VIOLINML
94 Giardia duodenalis Giardiasis (Beaver fever) VIOLINML
95 Haemophilus influenzae Meningitis VIOLINML
96 Haemophilus parasuis Glasser's disease VIOLINML
97 Haemophilus somnus VIOLINML
98 Hantavirus Hantavirus Pulmonary Syndrome VIOLINML
99 Helicobacter pylori Ulcers VIOLINML
100 Hendra virus Hendra virus disease VIOLINML
101 Hepatitis A virus Hepatitis A VIOLINML
102 Hepatitis B virus Hepatitis B VIOLINML
103 Hepatitis C virus Hepatitis C VIOLINML
104 Hepatitis D virus VIOLINML
105 Hepatitis E virus Hepatitis E VIOLINML
106 Herpes simplex virus type 1 and 2 Herpes VIOLINML
107 Hirame rhabdovirus VIOLINML
108 Human coxsackievirus VIOLINML
109 Human cytomegalovirus VIOLINML
110 Human Immunodeficiency Virus Acquired Immunodeficiency Syndrome (AIDS) VIOLINML
111 Human metapneumovirus Respiratory tract infection VIOLINML
112 Human Papillomavirus HPV infection VIOLINML
113 Human Respiratory Syncytial Virus Respiratory tract disease VIOLINML
114 Infectious Bronchitis Virus (IBV) Infectious Bronchitis VIOLINML
115 Infectious Bursal Disease Virus (IBDV) Infectious Bursal Disease VIOLINML
116 Infectious Hematopoietic Necrosis Virus Infectious hematopoietic necrosis VIOLINML
117 infectious laryngotracheitis virus VIOLINML
118 Infectious pancreatic necrosis virus VIOLINML
119 Infectious salmon anemia virus Infectious Salmon Anemia VIOLINML
120 Influenza virus Influenza (flu) VIOLINML
121 Japanese encephalitis virus Japanese encephalitis VIOLINML
122 Lassa Fever Virus Lassa fever VIOLINML
123 Lawsonia intracellularis Lawsonia intracellularis infection VIOLINML
124 Leishmania amazonensis Leishmaniasis VIOLINML
125 Leishmania donovani Visceral leishmaniasis VIOLINML
126 Leishmania infantum Infantile visceral leishmaniasis VIOLINML
127 Leishmania major Cutaneous leishmaniasis VIOLINML
128 Leptospira spp. Leptospirosis VIOLINML
129 Listeria monocytogenes Listeriosis VIOLINML
130 Lymphocytic choriomeningitis virus Lymphocytic choriomeningitis VIOLINML
131 Mannheimia haemolytica Bovine Respiratory Disease VIOLINML
132 Marburg Virus Hemorrhagic fever VIOLINML
133 Marek's disease virus Marek's disease VIOLINML
134 Measles virus Measles VIOLINML
135 Mink enteritis virus Mink Enteritis VIOLINML
136 Mumps virus Mumps VIOLINML
137 Murine Cytomegalovirus VIOLINML
138 Murine leukemia virus VIOLINML
139 Mycobacterium avium VIOLINML
140 Mycobacterium bovis Tuberculosis VIOLINML
141 Mycobacterium marinum VIOLINML
142 Mycobacterium tuberculosis Tuberculosis VIOLINML
143 Mycoplasma gallisepticum Chronic respiratory disease VIOLINML
144 Mycoplasma hyopneumoniae Porcine Enzootic Pneumonia VIOLINML
145 Mycoplasma synoviae Respiratory tract disease and synovitis VIOLINML
146 Neisseria meningitidis Meningitis VIOLINML
147 Neospora caninum Neosporosis VIOLINML
148 Newcastle disease virus Newcastle disease VIOLINML
149 Nipah virus Nipah virus disease VIOLINML
150 Orf Virus Orf disease, Sore mouth (Ovine Ecthyma) VIOLINML
151 Parainfluenza virus VIOLINML
152 Pasteurella multocida Pasteurellosis, fowl cholera VIOLINML
153 Pigeonpox virus Pigeon Pox VIOLINML
154 Piscirickettsia salmonis Salmon Rickettsial Disease, Piscirickettsiosis VIOLINML
155 Plasmodium spp. Malaria VIOLINML
156 Poliovirus Polio VIOLINML
157 Porcine circovirus 2 Postweaning multisystemic wasting syndrome VIOLINML
158 Porcine parvovirus SMEDI, reproductive failure VIOLINML
159 Porcine respiratory and reproductive syndrome virus Porcine Reproductive and Respiratory Syndrome (PRRS), Blue-Ear Pig Disease VIOLINML
160 Porcine rotavirus Diarrhea VIOLINML
161 Porphyromonas gulae Canine periodontitis VIOLINML
162 Pseudomonas aeruginosa Pseudomonas aeruginosa infection VIOLINML
163 Pseudorabies virus Aujeszky's disease VIOLINML
164 Psittacid herpesvirus 1 Pacheco's Parrot Disease VIOLINML
165 Rabbit hemorrhagic disease virus Rabbit hemorrhagic disease VIOLINML
166 Rabies virus Rabies VIOLINML
167 Reticuloendotheliosis Virus Tumors, wasting syndrome VIOLINML
168 Ricin toxin of Ricinus communis Ricin poisoning VIOLINML
169 Rickettsia spp Spotted Fever, Typhus VIOLINML
170 Riemerella anatipestifer New duck disease, Infectious serositis, Pasteurella anatipestifer infection VIOLINML
171 Rift Valley Fever virus Rift valley fever VIOLINML
172 rinderpest virus VIOLINML
173 Rotavirus Gastroenteritis VIOLINML
174 Rubella virus Rubella VIOLINML
175 Salmonella spp. Salmonellosis VIOLINML
176 Sarcocystis neurona Equine protozoal myeloencephalitis VIOLINML
177 SARS-CoV Severe Acute Respiratory Syndrome (SARS) VIOLINML
178 Schistosoma japonicum Schistosomiasis VIOLINML
179 Schistosoma mansoni Schistosomiasis VIOLINML
180 Shigella Shigellosis VIOLINML
181 Simian Immunodeficiency Virus Simian AIDS VIOLINML
182 Sindbis virus Encephalitis VIOLINML
183 Staphylococcus aureus Staph infections VIOLINML
184 Streptococcus agalactiae Group B streptococcus (GBS) infection VIOLINML
185 Streptococcus equi Strangles (also equine distemper) VIOLINML
186 Streptococcus pneumoniae Pneumonia VIOLINML
187 Streptococcus pyogenes Group A streptococcal infections, Strep throat, Scarlet fever VIOLINML
188 Streptococcus suis VIOLINML
189 Theileria annulata Theileriosis VIOLINML
190 Theileria parva East Coast Fever VIOLINML
191 Tick-borne Encephalitis Virus (TBEV) Tick-borne Encephalitis VIOLINML
192 Toxoplasma gondii Toxoplasmosis VIOLINML
193 Transmissible gastroenteritis virus Porcine transmissible gastroenteritis VIOLINML
194 Treponema pallidum Syphilis VIOLINML
195 Trichinella spiralis VIOLINML
196 Trichomonas foetus VIOLINML
197 Trypanosoma brucei African trypanosomiasis (African Sleeping Sickness) VIOLINML
198 Trypanosoma cruzi Chagas disease VIOLINML
199 Turkey hemorrhagic enteritis virus Hemorrhagic enteritis VIOLINML
200 Vaccinia virus VIOLINML
201 Varicella-zoster virus chickenpox / shingles VIOLINML
202 Variola virus Smallpox VIOLINML
203 VEE Virus Venezuelan equine encephalitis VIOLINML
204 Vibrio anguillarum (Listonella anguillarum) Vibrosis VIOLINML
205 Vibrio cholerae Cholera VIOLINML
206 Viral haemorrhagic septicaemia virus VIOLINML
207 West Nile virus West Nile fever VIOLINML
208 Western equine encephalomyelitis virus Western equine encephalomyelitis (WEE) VIOLINML
209 Yellow fever virus Yellow fever VIOLINML
210 Yersinia enterocolitica Yersiniosis VIOLINML
211 Yersinia pestis Plague VIOLINML
212 Yersinia pseudotuberculosis Yersiniosis VIOLINML
213 Yersinia ruckeri Enteric redmouth disease VIOLINML

     Provenance: All VIOLINML documents are created on the fly from the data stored in the VIOLIN database.