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VIOLINML

     We have created an eXtensible Markup Language (XML)-based data exchange format VIOLINML for VIOLIN data exchange. The VIOLINML DTD or XML Schema defines VIOLINML. We also ceates a web page in Here to explain the details of the VIOLINML data structure.

     XML uses simple text-based markup to describe the structure and semantics of ordered data, thereby allowing for standardized data formatting and interchange. VIOLINML allows for a portable, system-independent, machine-parseable, and human-readable representation of general vaccine information for a particular pathogen stored in VIOLIN. You can download individual VIOLINML documents below.

Index Pathogen Name Disease Export to XML
1 Actinobacillus pleuropneumoniae porcine pleuropneumonia VIOLINML
2 Adenovirus Respiratory infection VIOLINML
3 Aeromonas hydrophila VIOLINML
4 Aeromonas salmonicida Furunculosis, Bald sea urchin disease VIOLINML
5 African horse sickness virus VIOLINML
6 African Swine Fever Virus African Swine Fever VIOLINML
7 Allergy Allergy VIOLINML
8 Arthritis VIOLINML
9 Atherosclerosis Atherosclerosis, arteriosclerotic vascular disease (ASVD) VIOLINML
10 Avian Encephalomyelitis Virus Avian Encephalomyelitis VIOLINML
11 Avian Paramyxovirus VIOLINML
12 Avian pneumovirus Turkey rhinotracheitis, Avian rhinotracheitis, Swollen head syndrome VIOLINML
13 Avian Polyomavirus Papovavirus, Budgerigar fledgling disease, Psittacine polyomavirus VIOLINML
14 Avian Reovirus Viral Arthritis, Pale Bird Syndrome, Tenosynovitis VIOLINML
15 Babesia bovis Babesiosis, Texas Cattle Fever VIOLINML
16 Babesia canis Piroplasmosis VIOLINML
17 Bacillus anthracis Anthrax VIOLINML
18 Bluetongue virus Bluetongue disesase VIOLINML
19 Bordetella avium Bordetellosis VIOLINML
20 Bordetella bronchiseptica Infectious bronchitis, kennel cough VIOLINML
21 Bordetella pertussis Whooping Cough VIOLINML
22 Borna disease virus VIOLINML
23 Borrelia burgdorferi Lyme Disease VIOLINML
24 Bovine coronavirus VIOLINML
25 Bovine herpesvirus 1 Infectious bovine rhinotracheitis VIOLINML
26 Bovine Leukemia virus VIOLINML
27 Bovine papillomavirus Warts VIOLINML
28 Bovine Parainfluenza 3 Virus (BPIV-3) VIOLINML
29 Bovine Respiratory Syncytial Virus Respiratory Disease VIOLINML
30 Bovine viral diarrhea virus 1 Bovine viral Diarrhea (BVD) VIOLINML
31 Bovine viral diarrhea virus 2 Bovine viral diarrhea VIOLINML
32 Brucella spp. Brucellosis VIOLINML
33 Burkholderia pseudomallei Melioidosis VIOLINML
34 Campylobacter fetus bovine venereal campylobacteriosis (BVC) VIOLINML
35 Campylobacter jejuni Campylobacterosis VIOLINML
36 Canarypox virus Canary Pox VIOLINML
37 Cancer Cancer VIOLINML
38 Canine adenovirus type 1 Fox Encephalitis, Infectious Canine Hepatitis VIOLINML
39 Canine Adenovirus Type 2 VIOLINML
40 Canine coronavirus Intestinal disease VIOLINML
41 Canine distemper virus Canine distemper VIOLINML
42 Canine parainfluenza virus VIOLINML
43 Canine parvovirus Canine parvovirus infection VIOLINML
44 Caprine herpesvirus type 1 (CpHV-1) VIOLINML
45 Chicken Anemia Virus Chicken infectious anemia, Blue wing disease, Anemia dermatitis syndrome, Hemorrhagic aplastic anemi VIOLINML
46 chikungunya virus VIOLINML
47 Chlamydia muridarum VIOLINML
48 Chlamydia trachomatis Chlamydia VIOLINML
49 Chlamydophila abortus Abortion and fetal death VIOLINML
50 Chlamydophila pneumoniae Pneumonia VIOLINML
51 Chlamydophila psittaci Respiratory psittacosis, avian chlamydiosis VIOLINML
52 Classical swine fever virus Classical swine fever, hog cholera VIOLINML
53 Clostridium botulinum Botulism VIOLINML
54 Clostridium perfringens Food poisioning, Gas gangrene VIOLINML
55 Clostridium tetani Tetanus VIOLINML
56 Coccidioides spp. Coccidioidomycosis (California disease, Desert rheumatism, San Joaquin valley fever, and Valley fev VIOLINML
57 Corynebacterium diphtheriae Diphtheria VIOLINML
58 Corynebacterium pseudotuberculosis VIOLINML
59 Coxiella burnetii Q fever VIOLINML
60 Crimean-Congo Haemorrhagic Fever (CCHF) VIOLINML
61 Cryptosporidium parvum Cryptosporidiosis VIOLINML
62 Dengue Virus Dengue Fever VIOLINML
63 Determination of Amino Acid Composition VIOLINML
64 Diabetes Diabetes VIOLINML
65 Duck enteritis virus Duck Plague VIOLINML
66 Duck hepatitis virus 1 Duck virus hepatitis (DVH) VIOLINML
67 Eastern Equine Encephalitis Virus Encephalitis VIOLINML
68 Ebola virus Ebola hemorrhagic fever VIOLINML
69 Edwardsiella ictaluri Enteric septicemia of channel catfish (ESC) VIOLINML
70 Edwardsiella tarda VIOLINML
71 Eimeria maxima Coccidiosis VIOLINML
72 Eimeria spp. Coccidiosis VIOLINML
73 Eimeria tenella Hemorrhagic cecal coccidiosis VIOLINML
74 Entamoeba histolytica Amoebiasis VIOLINML
75 Equid herpesvirus Equine Rhinopneumonitis VIOLINML
76 Equine arteritis virus Equine arteritis VIOLINML
77 Equine rotavirus Rotaviral Diarrhea VIOLINML
78 Erysipelothrix rhusiopathiae Erysipelas VIOLINML
79 Escherichia coli Hemorrhagic colitis VIOLINML
80 Experimental autoimmune encephalomyelitis Experimental autoimmune encephalomyelitis (EAE) VIOLINML
81 Experimental autoimmune uveitis Experimental autoimmune uveitis VIOLINML
82 Feline calicivirus Feline Respiratory Infections VIOLINML
83 Feline herpesvirus 1 Feline viral rhinotracheitis VIOLINML
84 Feline immunodeficiency virus Feline AIDS VIOLINML
85 Feline infectious peritonitis virus Feline infectious peritonitis (FIP) VIOLINML
86 Feline leukemia virus Feline leukemia virus infection VIOLINML
87 Feline panleukopenia virus Feline Distemper VIOLINML
88 Flavobacterium columnare Columnaris VIOLINML
89 Foot-and-mouth disease virus Foot-and-mouth disease VIOLINML
90 Fowlpox virus Fowlpox VIOLINML
91 Francisella tularensis Tularemia VIOLINML
92 Gallid herpesvirus 1 Avian infectious laryngotracheitis, Fowl Laryngotracheitis VIOLINML
93 Giardia duodenalis Giardiasis (Beaver fever) VIOLINML
94 Haemophilus influenzae Meningitis VIOLINML
95 Haemophilus parasuis Glasser's disease VIOLINML
96 Haemophilus somnus VIOLINML
97 Hantavirus Hantavirus Pulmonary Syndrome VIOLINML
98 Helicobacter pylori Ulcers VIOLINML
99 Hendra virus Hendra virus disease VIOLINML
100 Hepatitis A virus Hepatitis A VIOLINML
101 Hepatitis B virus Hepatitis B VIOLINML
102 Hepatitis C virus Hepatitis C VIOLINML
103 Hepatitis D virus VIOLINML
104 Hepatitis E virus Hepatitis E VIOLINML
105 Herpes simplex virus type 1 and 2 Herpes VIOLINML
106 Hirame rhabdovirus VIOLINML
107 Human coxsackievirus VIOLINML
108 Human cytomegalovirus VIOLINML
109 Human Immunodeficiency Virus Acquired Immunodeficiency Syndrome (AIDS) VIOLINML
110 Human metapneumovirus Respiratory tract infection VIOLINML
111 Human Papillomavirus HPV infection VIOLINML
112 Human Respiratory Syncytial Virus Respiratory tract disease VIOLINML
113 Infectious Bronchitis Virus (IBV) Infectious Bronchitis VIOLINML
114 Infectious Bursal Disease Virus (IBDV) Infectious Bursal Disease VIOLINML
115 Infectious Hematopoietic Necrosis Virus Infectious hematopoietic necrosis VIOLINML
116 infectious laryngotracheitis virus VIOLINML
117 Infectious pancreatic necrosis virus VIOLINML
118 Infectious salmon anemia virus Infectious Salmon Anemia VIOLINML
119 Influenza virus Influenza (flu) VIOLINML
120 Japanese encephalitis virus Japanese encephalitis VIOLINML
121 Lassa Fever Virus Lassa fever VIOLINML
122 Lawsonia intracellularis Lawsonia intracellularis infection VIOLINML
123 Leishmania amazonensis Leishmaniasis VIOLINML
124 Leishmania donovani Visceral leishmaniasis VIOLINML
125 Leishmania infantum Infantile visceral leishmaniasis VIOLINML
126 Leishmania major Cutaneous leishmaniasis VIOLINML
127 Leptospira spp. Leptospirosis VIOLINML
128 Listeria monocytogenes Listeriosis VIOLINML
129 Lymphocytic choriomeningitis virus Lymphocytic choriomeningitis VIOLINML
130 Mannheimia haemolytica Bovine Respiratory Disease VIOLINML
131 Marburg Virus Hemorrhagic fever VIOLINML
132 Marek's disease virus Marek's disease VIOLINML
133 Measles virus Measles VIOLINML
134 Mink enteritis virus Mink Enteritis VIOLINML
135 Mumps virus Mumps VIOLINML
136 Murine Cytomegalovirus VIOLINML
137 Murine leukemia virus VIOLINML
138 Mycobacterium avium VIOLINML
139 Mycobacterium bovis Tuberculosis VIOLINML
140 Mycobacterium marinum VIOLINML
141 Mycobacterium tuberculosis Tuberculosis VIOLINML
142 Mycoplasma gallisepticum Chronic respiratory disease VIOLINML
143 Mycoplasma hyopneumoniae Porcine Enzootic Pneumonia VIOLINML
144 Mycoplasma synoviae Respiratory tract disease and synovitis VIOLINML
145 Neisseria meningitidis Meningitis VIOLINML
146 Neospora caninum Neosporosis VIOLINML
147 Newcastle disease virus Newcastle disease VIOLINML
148 Nipah virus Nipah virus disease VIOLINML
149 Orf Virus Orf disease, Sore mouth (Ovine Ecthyma) VIOLINML
150 Parainfluenza virus VIOLINML
151 Pasteurella multocida Pasteurellosis, fowl cholera VIOLINML
152 Pigeonpox virus Pigeon Pox VIOLINML
153 Piscirickettsia salmonis Salmon Rickettsial Disease, Piscirickettsiosis VIOLINML
154 Plasmodium spp. Malaria VIOLINML
155 Poliovirus Polio VIOLINML
156 Porcine circovirus 2 Postweaning multisystemic wasting syndrome VIOLINML
157 Porcine parvovirus SMEDI, reproductive failure VIOLINML
158 Porcine respiratory and reproductive syndrome virus Porcine Reproductive and Respiratory Syndrome (PRRS), Blue-Ear Pig Disease VIOLINML
159 Porcine rotavirus Diarrhea VIOLINML
160 Porphyromonas gulae Canine periodontitis VIOLINML
161 Pseudomonas aeruginosa Pseudomonas aeruginosa infection VIOLINML
162 Pseudorabies virus Aujeszky's disease VIOLINML
163 Psittacid herpesvirus 1 Pacheco's Parrot Disease VIOLINML
164 Rabbit hemorrhagic disease virus Rabbit hemorrhagic disease VIOLINML
165 Rabies virus Rabies VIOLINML
166 Reticuloendotheliosis Virus Tumors, wasting syndrome VIOLINML
167 Ricin toxin of Ricinus communis Ricin poisoning VIOLINML
168 Rickettsia spp Spotted Fever, Typhus VIOLINML
169 Riemerella anatipestifer New duck disease, Infectious serositis, Pasteurella anatipestifer infection VIOLINML
170 Rift Valley Fever virus Rift valley fever VIOLINML
171 rinderpest virus VIOLINML
172 Rotavirus Gastroenteritis VIOLINML
173 Rubella virus Rubella VIOLINML
174 Salmonella spp. Salmonellosis VIOLINML
175 Sarcocystis neurona Equine protozoal myeloencephalitis VIOLINML
176 SARS-CoV Severe Acute Respiratory Syndrome (SARS) VIOLINML
177 Schistosoma japonicum Schistosomiasis VIOLINML
178 Schistosoma mansoni Schistosomiasis VIOLINML
179 Shigella Shigellosis VIOLINML
180 Simian Immunodeficiency Virus Simian AIDS VIOLINML
181 Sindbis virus Encephalitis VIOLINML
182 Staphylococcus aureus Staph infections VIOLINML
183 Streptococcus agalactiae Group B streptococcus (GBS) infection VIOLINML
184 Streptococcus equi Strangles (also equine distemper) VIOLINML
185 Streptococcus pneumoniae Pneumonia VIOLINML
186 Streptococcus pyogenes Group A streptococcal infections, Strep throat, Scarlet fever VIOLINML
187 Streptococcus suis VIOLINML
188 Theileria annulata Theileriosis VIOLINML
189 Theileria parva East Coast Fever VIOLINML
190 Tick-borne Encephalitis Virus (TBEV) Tick-borne Encephalitis VIOLINML
191 Toxoplasma gondii Toxoplasmosis VIOLINML
192 Transmissible gastroenteritis virus Porcine transmissible gastroenteritis VIOLINML
193 Treponema pallidum Syphilis VIOLINML
194 Trichinella spiralis VIOLINML
195 Trichomonas foetus VIOLINML
196 Trypanosoma brucei African trypanosomiasis (African Sleeping Sickness) VIOLINML
197 Trypanosoma cruzi Chagas disease VIOLINML
198 Turkey hemorrhagic enteritis virus Hemorrhagic enteritis VIOLINML
199 Vaccinia virus VIOLINML
200 Varicella-zoster virus chickenpox / shingles VIOLINML
201 Variola virus Smallpox VIOLINML
202 VEE Virus Venezuelan equine encephalitis VIOLINML
203 Vibrio anguillarum (Listonella anguillarum) Vibrosis VIOLINML
204 Vibrio cholerae Cholera VIOLINML
205 Viral haemorrhagic septicaemia virus VIOLINML
206 West Nile virus West Nile fever VIOLINML
207 Western equine encephalomyelitis virus Western equine encephalomyelitis (WEE) VIOLINML
208 Yellow fever virus Yellow fever VIOLINML
209 Yersinia enterocolitica Yersiniosis VIOLINML
210 Yersinia pestis Plague VIOLINML
211 Yersinia pseudotuberculosis Yersiniosis VIOLINML
212 Yersinia ruckeri Enteric redmouth disease VIOLINML

     Provenance: All VIOLINML documents are created on the fly from the data stored in the VIOLIN database.