VIOLIN: Vaccine Investigation and Online Information Network

News: Call for papers for the third ISV Pre-conference Computational Vaccinology Workshop (ICoVax 2013):

The third ISV Pre-conference Computational Vaccinology Workshop (ICoVax 2013) is a satellite workshop to be held on Oct. 26, 2013, prior to the general Vaccine & ISV Annual Global Congress. The meeting will be in Barcelona, Spain. The ICoVax 2013 workshop will include oral presentations of full length papers, poster presentations of accepted abstracts, and software demo. All accepted papers will be published in a peer-reviewed journal. Please see more information on the ICoVax 2013 Call for Papers web page.

Community Efforts

Vaccine Ontology: A community-based effort to develop the Vaccine Ontology (VO) for vaccine data standardization and automated reasoning. VO is being developed by collaboration with the Ontology for Biomedical Investigations (OBI), the National Center for Biomedical Ontology (NCBO) and the Infectious Disease Ontology (IDO) initiative.

VIOLIN News >>

3/8/2013: The supplement “ICoVaX” was published on BMC Bioinformatics: http://www.biomedcentral.com/bmcbioinformatics/supplements/14/S4 .
2/11-12/2013: Oliver will attend the CTSA Ontology Workshop in Orlando, FL. He will present the Vaccine Ontology (VO) in the workshop.
12/20/2012: A thematic series titled Vaccine and drug ontology in the study of mechanism and effect (VDOSME) was published in the Journal of Biomedical Semantics. The thematic series was co-organized by Oliver. See a related BioMed Central blog for more information. VO-related papers were presented.
10/24/2012: Allen and Oliver's algorithm for predicting eluted protein epitopes was announced by Vladmir Brusic as one of the winners in the 2nd Machine Learning Competition in Immunology 2012.
10/16/2012:Oliver presented an oral presentation in the general Vaccine & ISV Annual Global Congress. His presentation title is: Systematic annotation and analysis of "virmugens" - virulence factors whose mutants can be used as live attenuated vaccines.
10/13/2012: Oliver co-organized the 2nd ISV Pre-conference Computational Vaccinology Workshop (ICoVax 2012), a satellite workshop of the general Vaccine & ISV Annual Global Congress. Oliver also presented an oral presentation. Allen also attended the workshop and presented Vaxign software demo.

Latest Vaccine Publications >>

Merritt JH, Ollis AO, Fisher AC, Delisa MP. Glycans-by-design: Engineering bacteria for the biosynthesis of complex glycans and glycoconjugates Biotechnology and bioengineering 2013 [PMID: 23456823]
Hoffman WW. The case for vaccines South Dakota medicine : the journal of the South Dakota State Medical Association Spec no:10-16 2013 [PMID: 23444585]

Vaccine News >>

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SBWire (press release) Mar 6, 2013 17:50

Statistics: The VIOLIN vaccine database contains 3138 vaccines or vaccine candidates for 194 pathogens by manual curation from 1974 peer-reviewed papers. It also contains 24,345 vaccine-related abstracts and 10,317 full text documents.

Please cite this publication: Zuoshuang Xiang, Thomas Todd, Kim P. Ku, Bethany L. Kovacic, Charles B. Larson, Fang Chen, Andrew P. Hodges, Yuying Tian, Elizabeth A. Olenzek, Boyang Zhao, Lesley A. Colby, Howard G. Rush, Janet R. Gilsdorf, George W. Jourdian, Yongqun He. VIOLIN: Vaccine Investigation and Online Information Network. Nucleic Acids Res. 2008 Jan;36(Database issue):D923-8. [NAR] [PubMed] [PDF].

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