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Welcome

Community Efforts
VO

Vaccine Ontology: A community-based effort to develop the Vaccine Ontology (VO) for vaccine data standardization and automated reasoning.

To support vaccine safety and registry, the Ontology of Vaccine Adverse Events (OVAE) and Vaccination Informed Consent Ontology (VICO) are also developed.


VIOLIN News    >>
  • 04/19/2016: Our Vaccination Informed Consent Ontology (VICO) was published in J Biomed Semantics.
  • 04/01/2016: Our Vaxar paper was published in Comparaitve Medicine.
  • 9/28-30/2015: Oliver He attended the 4th Immunology Summit 2015 at Houston, USA. As a keynote speaker, on 9/28/2015 he presented a talk titled "Rational vaccine design using reverse vaccinology, database data analysis, and literature mining".
  • 7/27-30/2015: Oliver He attended the VDOS-2015 workshop and ICBO-2015 conference held at Lisbon, Portugal, on July 27-30. Oliver co-organized the VDOS-2015 workshop and he presented two full length articles as well. In the general ICBO-2015 conference, Oliver presented two posters and two software demostrations. See the details of these articles, posters, and demos, see the Publication page.
  • 7/23/2015: Our Vaxvec paper was accepted by the journal Vaccine.
Latest Vaccine Publications   >>

Vaccine News   >>

Statistics: The VIOLIN vaccine database contains 3464 vaccines or vaccine candidates for 211 pathogens by manual curation from 2394 peer-reviewed papers. It also contains 24,345 vaccine-related abstracts and 10,317 full text documents.

Please cite this publication for VIOLIN:

He Y, Racz R, Sayers S, Lin Y, Todd T, Hur J, Li X, Patel M, Zhao B, Chung M, Ostrow J, Sylora A, Dungarani P, Ulysse G, Kochhar K, Vidri B, Strait K, Jourdian GW, Xiang Z. Updates on the web-based VIOLIN vaccine database and analysis system. Nucleic Acids Research. 2014. 42 (D1): D1124-D1132. doi: 10.1093/nar/gkt1133. First published online: November 19, 2013. [NAR] [PubMed PMID: 24259431] [PDF] [PMCID: PMC3964998]

Or the previous VIOLIN manuscript:

Zuoshuang Xiang, Thomas Todd, Kim P. Ku, Bethany L. Kovacic, Charles B. Larson, Fang Chen, Andrew P. Hodges, Yuying Tian, Elizabeth A. Olenzek, Boyang Zhao, Lesley A. Colby, Howard G. Rush, Janet R. Gilsdorf, George W. Jourdian, Yongqun He. VIOLIN: Vaccine Investigation and Online Information Network. Nucleic Acids Res. 2008 Jan;36(Database issue):D923-8. [NAR] [PubMed PMID: 18025042] [PMCID: PMC2238972] [PDF].

More publications for citing specific VIOLIN programs



© 2007-2016 University of Michigan. VIOLIN data and tools are freely available for public use.