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Protegen BLAST search for genes and proteins associated with vaccine:

     The DNA and protein sequences of protective antigens stored in Protegen can be searched by our costomized BLAST programs. Please provide your sequence data as input. The output will be protective antigens that share DNA/protein sequences with your input sequence(s).

Protegen BLAST for genes and proteins associated with vaccine:
Program Database
Enter here your input data as   

Or load it from disk

Please read about FASTA format description

Set subsequence: From To

The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only

Expect    Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Database Genetic Codes (tblast[nx] only)

Frame shift penalty for blastx

Limit search to results of Entrez query

Other advanced options:        Show Tax Blast reports

   NCBI-gi      Graphical Overview    Alignment view
Descriptions    Alignments Color schema