VIOLIN Logo
VO Banner
Search: for Help
Protegen Home
Introduction
Statistics
News and Updates
Protegen Query
Protegen BLAST
Selected Bacteria
Brucella spp. (26)
B. anthracis (14)
E. coli (40)
M. tuberculosis (28)
N. meningitidis (18)
Selected Viruses
Ebola virus (19)
HIV (41)
Influenza virus (50)
Selected Parasites
Plasmodium (47)
Data Submission
Data Exchange
Data Download
Documentation
FAQs
Disclaimer
Contact Us
UMMS Logo


A4L

General Information
Protegen ID 1406
Sequence Strain (Species/Organism) Vaccinia virus
Taxonomy ID 10245
Molecule Role Protective antigen
References  
Gene Information
Gene Name A4L
NCBI Gene ID 3707521
Genbank Accession S71673
Locus Tag VACWR123
Gene Starting Position 113280
Gene Ending Position 114125
DNA Sequence 
>NC_006998.1:113280-114125 Vaccinia virus, complete genome
ATTACTTTTGGAATCGTTCAAAACCTTTGACTAGTTGTAGAATTTGATCTATTGCCCTACGCGTATACTC
CCTTGCATCATATACGTTCGTCACCAGATCGTTTGTTTCGGCCTGAAGTTGGTGCATATCTCTTTCAACA
TTCGACATGAGATCCTTAAGGGCCATATCGTCTAGATTTTGTTGAGATGCTGCTCCTGGATTTGGATTTT
GTTGTGCTGTTGTACATACTGTACCACCAGTAGGTGTAGGAGTACATACAGTGGCCACAATAGGAGGTTG
AGGAGGTGTAACCGTTGGAGTAGTACAAGAAATATTTCCATCCGATTGTTGTGTACATGTAGTTGTTGGT
AACGTCTGAGAAGGTTGGGTAGATGGCGGTGTCGTCGTCTTTTGATCTTTATTAAATTTAGAGATAATAT
CCTGAACAGCATTGCTCGGCGTCAACGCTGGAAGGAGTGAACTCGCCGGCGCATCAGTATCTTCAGACAG
CCAATCAAAAAGATTAGACATATCAGATGATGTATTAGTTTGTTGTCGTGGTTTTGGTGTAGGAACAGTA
CTACTAGGTAGAAGAATAGGAGCCGGTGTAGCTGTTGGAACCGGCTGTGGAGTTATATGAATAGTTGGTT
GTAGCGGTTGGATAGGCTGTCTGCTGGCGACCGTCATATTATCTCTAGCTAGTTGTTCTCGCAACTGTCT
TTGATAATACGACTCTTGAGACTTTAGTCCTATTTCAATCGCTTCATCCTTTTTCGTATCCGGATCCTTT
TCTTCAGAATAATAGATTGACGACTTTGGTGTAGAGGATTCTGCCAGCCCCTGTGAGAACTTGTTAAAGA
AGTCCA
Protein Information
Protein Name 39kDa core protein
NCBI Protein GI 66275920
Protein Accession YP_233005
Protein pI 4.61
Protein Weight 29735.86
Protein Length 281
Protein Note similar to VACCP-A4L; complexes with core protein p4a/4a
Protein Sequence 
>YP_233005.1 39kDa core protein [Vaccinia virus]
MDFFNKFSQGLAESSTPKSSIYYSEEKDPDTKKDEAIEIGLKSQESYYQRQLREQLARDNMTVASRQPIQ
PLQPTIHITPQPVPTATPAPILLPSSTVPTPKPRQQTNTSSDMSNLFDWLSEDTDAPASSLLPALTPSNA
VQDIISKFNKDQKTTTPPSTQPSQTLPTTTCTQQSDGNISCTTPTVTPPQPPIVATVCTPTPTGGTVCTT
AQQNPNPGAASQQNLDDMALKDLMSNVERDMHQLQAETNDLVTNVYDAREYTRRAIDQILQLVKGFERFQ
K
Epitope Information
IEDB Linear Epitope