VIOLIN Logo
VO Banner
Search: for Help
Protegen Home
Introduction
Statistics
News and Updates
Protegen Query
Protegen BLAST
Selected Bacteria
Brucella spp. (26)
B. anthracis (14)
E. coli (40)
M. tuberculosis (26)
N. meningitidis (18)
Selected Viruses
Ebola virus (19)
HIV (41)
Influenza virus (50)
Selected Parasites
Plasmodium (47)
Data Submission
Data Exchange
Data Download
Documentation
FAQs
Disclaimer
Contact Us
UMMS Logo


H5R

General Information
Protegen ID 1407
Sequence Strain (Species/Organism) Vaccinia virus
Taxonomy ID 10245
Molecule Role Protective antigen
References  
Gene Information
Gene Name H5R
NCBI Gene ID 3707559
Genbank Accession AY603355
Locus Tag VACWR103
Gene Starting Position 91870
Gene Ending Position 92481
DNA Sequence 
>NC_006998.1:91870-92481 Vaccinia virus, complete genome
AATGGCGTGGTCAATTACAAATAAAGCGGATACTAGTAGCTTCACAAAGATGGCTGAAATCAGAGCTCAT
CTAAAAAATAGCGCTGAAAATAAAGATAAAAACGAGGATATTTTCCCGGAAGATGTAATAATTCCATCTA
CTAAGCCCAAAACCAAACGAGCCACTACTCCTCGTAAACCAGCGGCTACTAAAAGATCAACCAAAAAGGA
GGAAGTGGAAGAAGAAGTAGTTATAGAGGAATATCATCAAACAACTGAAAAAAATTCTCCATCTCCTGGA
GTCAGCGACATTGTAGAAAGCGTGGCCGCTGTAGAGCTCGATGATAGCGACGGGGATGATGAACCTATGG
TACAAGTTGAAGCTGGTAAAGTAAATCATAGTGCTAGAAGCGATCTCTCTGACCTAAAGGTGGCTACCGA
CAATATCGTTAAAGATCTTAAGAAAATTATTACTAGAATCTCTGCAGTATCGACGGTTCTAGAGGATGTT
CAAGCAGCTGGTATCTCTAGACAATTTACTTCTATGACTAAAGCTATTACAACACTATCTGATCTAGTCA
CCGAGGGAAAATCTAAAGTTGTTCGTAAAAAAGTTAAAACTTGTAAGAAGTA
Protein Information
Protein Name late transcription factor VLTF-4
NCBI Protein GI 66275900
Protein Accession YP_232985
Protein pI 7.61
Protein Weight 20316.25
Protein Length 203
Protein Note late transcription factor VLTF-4; initiates transcription from late gene promoters; inhibition of DNA replication causes VLTF-4 to be diffusely distributed in the cytoplasm but is discretely localized during a productive infection; The poxviridae are enveloped unsegmented dsDNA viruses; unlike many dsDNA viruses that replicate in the host nucleus poxviruses encode their own replication machinery and therefore replicate in the cytoplasm; viral genes are expressed in a bi-phasic manner with early genes encoding non-structural proteins involved in genome replication and late genes encoding the viral structural proteins
Protein Sequence 
>YP_232985.1 morphogenesis-related, substrate of B1R kinase [Vaccinia virus]
MAWSITNKADTSSFTKMAEIRAHLKNSAENKDKNEDIFPEDVIIPSTKPKTKRATTPRKPAATKRSTKKE
EVEEEVVIEEYHQTTEKNSPSPGVSDIVESVAAVELDDSDGDDEPMVQVEAGKVNHSARSDLSDLKVATD
NIVKDLKKIITRISAVSTVLEDVQAAGISRQFTSMTKAITTLSDLVTEGKSKVVRKKVKTCKK
Vaxign Prediction
Localization(Probability)
(Prob.=0)
Adhesin Probability 0.314
Trans-membrane Helices 0
Detailed Vaxign Results Vaxign Results
Epitope Information
IEDB Linear Epitope