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ORF

General Information
Protegen ID 1412
Sequence Strain (Species/Organism) Infectious pancreatic necrosis virus
Taxonomy ID 11002
Other Database IDs CDD:281092
Molecule Role Protective antigen
Related Vaccines(s) IPNV DNA vaccine pEGFP-N1-SegA and pEGFP-N1-VP2
References  
Gene Information
Gene Name ORF
NCBI Nucleotide GI 221910
DNA Sequence 
>gi|221910|dbj|D00701.1|IPNSEGA Infectious pancreatic necrosis virus genes for small ORF, large ORF
GTGTGTTTGACAGAAAGAGAGTTTCAACGTTAGTGGTAACCCACGAGCGGAGAGCTCTTACGGAGGAGCT
CTCCGTCGATGGCGAAAGCCCTTTCTAACAAACAAACAAACAATCTATATTCAATACAAGATGAACACAA
ACAAGGCAACCGCAACTTACTTGAAATCCATTATGCTTCCAGAGACTGGACCAGCAAGCATCCCGGACGA
CATAACGGAGAGACACATCCTAAAACAAGAGACCTCGTCATACAACCTAGAGGTCTCCGAATCAGGAAGT
GGCATTCTTGTTTGTTTCCCTGGGGCACCAGGCTCACGGATCGGTGCACACTACAGATGGAATGCGAACC
AGACGGGGCTGGAGTTCGACCAGTGGCTGGAGACGTCGCAGGACCTGAAGAAAGCCTTCAACTACGGGAG
GCTGATCTCAAGGAAATACGACATCCAAAGCTCCACACTACCGGCCGGTCTCTATGCTCTGAACGGGACG
CTCAACGCTGCCACCTTCGAAGGCAGTCTGTCTGAGGTGGAGAGCCTGACCTACAACAGCCTGATGTCCC
TAACAACGAACCCCCAGGACAAAGTCAACAACCAGCTGGTGACCAAAGGAGTCACAGTCCTGAATCTACC
AACAGGGTTCGACAAACCATACGTCCGCCTAGAGGACGAGACACCCCAGGGTCTCCAGTCAATGAACGGG
GCCAAGATGAGGTGCACAGCTGCAATTGCACCGCGGAGGTACGAGATCGACCTCCCATCCCAACGCCTAC
CCCCCGTTCCTGCGACAGGAACCCTCACCACTCTCTACGAGGGAAACGCCGACATCGTCAACTCCACAAC
AGTGACGGGAGACATAAACTTCAGTCTGGCAGAACAACCCGCGAACGAGACCAAGTTCGACTTCCAGCTG
GACTTCATGGGCCTTGACAACGACGTCCCAGTTGTCACAGTGGTCAGCTCCGTGCTGGCCACAAATGACA
ACTACAGAGGAGTCTCAGCCAAGATGACCCAGTCCATCCCGACCGAGAACATCACAAAGCCGATCACCAG
GGTCAAGCTGTCATACAAGATCAACCAGCAGACAGCAATCGGCAACGTCGCCACCCTGGGCACAATGGGT
CCGACTACCGTCTCCTTCTCATCAGGGAACGGAAATGTCCCCGGCGTGCTCAGACCAATCACACTGGTGG
CCTATGAGAAGATGACACCGCTGTCCATCCTGACCGTAGCTGGAGTGTCCAACTACGAGTCGTACCCAAA
CCCAGAACTCCTCAAGAACATGGTGACACGCTATGGCAAGTACGACCCCGAAGGTCTCAACTATGCCAAG
ATGATCCTGTCCCACAGGGAAGAGCTGGACATCAGGACAGTGTGGAGGACAGAGGAGTACAAGGAGAGGA
CCAGAGTCTTCAACGAAATCACGGACTTCTCCAGTGACCTGCCCACGTCAAAGGCATGGGGCTGGAGAGA
CATAGTCAGAGGAATTCGGAAAGTCGCAGCTCCTGTACTGTCCACGCTGTTTCCAATGGCAGCACCACTC
ATAGGAATGGCAGACCAATTCATTGGAGATCTCACCAAGACCAACGCAGCAGGCGGAAGGTACCACTCCA
TGGCCGCAGGAGGGCGCCACAAAGACGTGCTCGAGTCCTGGGCAAGCGGAGGGCCCGACGGAAAATTCTC
CCGAGCCCTCAAGAACAGGCTGGAGTCCGCCAACTACGAGGAAGTCGAGCTTCCACCCCCCTCAAAAGGA
GTCATCGTCCCTGTGGTGCACACAGTCAAGAGTGCACCAGGCGAGGCATTCGGGTCCCTGGCAATCATAA
TTCCAGGGGAGTACCCCGAGCTTCTAGATGCCAACCAGCAGGTCCTATCCCACTTCGCAAACGACACCGG
GAGCGTGTGGGGCATAGGAGAGGACATACCCTTCGAGGGAGACAACATGTGCTACACTGCACTCCCACTC
AAGGAGATCAAAAGAAACGGGAACATAGTAGTCGAGAAGATCTTTGCTGGACCAATCATGGGTCCCTCTG
CTCAACTAGGACTGTCCCTACTTGTGAACGACATCGAGGACGGAGTTCCAAGGATGGTATTCACCGGCGA
AATCGCCGATGACGAGGAGACAATCATACCAATCTGCGGTGTAGACATCAAAGCCATCGCAGCCCATGAA
CCAGGGCTGCCACTCATCGGCAACCAACCAGGAGTGGACGAGGAGGTGCGAAACACATCCCTGGCCGCAC
ACCTGATCCAGACCGGAACCCTGCCCGTACAACGAGCAAAGGGCTCCAACAAGAGGATCAAGTACCTGGG
AGAGCTGATGGCATCAAATGCATCCGGGATGGACGAGGAACTGCAACGCCTCCTGAACGCCACAATGGCA
CGGGCCAAAGAAGTCCAGGACGCCGAGATCTACAAACTTCTTAAGCTCATGGCATGGACCAGAAAGAACG
ACCTCACCGACCACATGTACGAGTGGTCAAAAGAGGACCCCGATGCACTAAAGTTCGGAAAGCTCATCAG
CACGCCACCAAAGCACCCTGAGAAGCCCAAAGGACCAGACCAACACCACGCCCAAGAGGCGAGAGCCACC
CGCATATCACTGGACGCCGTGAGAGCCGGGGCGGACTTCGCCACACCGGAATGGGTCGCGCTGAACAACT
ACCGCGGCCCATCTCCCGGGCAGTTCAAGTACTACCTGATCACTGGACGAGAACCAGAACCAGGCGACGA
GTACGAGGACTACATAAAACAACCCATTGTGAAACCGACCGACATGAACAAAATCAGACGTCTAGCCAAC
AGTGTGTACGGCCTCCCACACCAGGAACCAGCACCAGAGGAGTTCTACGATGCAGTTGCAGCTGTATTCG
CACAGAACGGAGGCAGAGGTCCCGACCAGGACCAAATGCAAGACCTCAGGGAGCTCGCAAGACAGATGAA
ACGACGACCCCGGAACGCCGATGCACCACGGAGAACCAGAGCGCCAGCGGAACCGGCACCGCCCGGACGC
TCAAGGTTCACCCCCAGCGGAGACAACGCTGAGGTGTAACGACTACTCTCTTTCCTGACTGATCCCCTGG
CCAAAACCCCGGCCCCCCAGGGGG
Protein Information
Protein Name small ORF
NCBI Protein GI 221911
Protein Accession BAA00608.1
Protein pI 10.04
Protein Weight 17095.06
Protein Length 213
Protein Note 5' end of plus-strand segment A.
Protein Sequence 
>BAA00608.1 small ORF [Infectious pancreatic necrosis virus]
MAKALSNKQTNNLYSIQDEHKQGNRNLLEIHYASRDWTSKHPGRHNGETHPKTRDLVIQPRGLRIRKWHS
CLFPWGTRLTDRCTLQMECEPDGAGVRPVAGDVAGPEESLQLREADLKEIRHPKLHTTGRSLCSERDAQR
CHLRRQSV
Vaxign Prediction
Localization(Probability)
(Prob.=0)
Adhesin Probability 0.066
Trans-membrane Helices 0
Detailed Vaxign Results Vaxign Results
Epitope Information
IEDB Linear Epitope