VIOLIN: Vaccine Investigation and Online Information Network

HA

General Information

Protegen ID

1620

Sequence Strain (Species/Organism)

synthetic construct

Taxonomy ID

32630

Other Database IDs

CDD:278910

Molecule Role

Protective antigen

References

Gene Information

Gene Name

NCBI Nucleotide GI

89994009

DNA Sequence

>gi|89994009|gb|DQ420166.1| Synthetic construct codon-optimized hemagglutinin (HA) gene, complete cds
ATGGAGAAGATCGTGCTGCTGCTGGCCATCGTGAGCCTGGTGAAGAGCGACCAGATCTGCATCGGCTACC
ACGCCAACAACAGCACCGAGCAGGTGGACACCATCATGGAGAAGAACGTGACCGTGACCCACGCCCAGGA
CATCCTGGAGAAGACCCACAACGGCAAGCTGTGCGACCTGAACGGCGTGAAGCCCCTGATCCTGCGCGAC
TGCAGCGTGGCCGGCTGGCTGCTGGGCAACCCCATGTGCGACGAGTTCATCAACGTGCCCGAGTGGAGCT
ACATCGTGGAGAAGGCCAGCCCCGCCAACGACCTGTGCTACCCCGGCGACTTCAACGACTACGAGGAGCT
GAAGCACCTGCTGAGCCGCACCAACCACTTCGAGAAGATCCAGATCATCCCCAAGAGCAGCTGGAGCAAC
CACGACGCCAGCAGCGGCGTGAGCAGCGCCTGCCCCTACCACGGCCGCAGCAGCTTCTTCCGCAACGTGG
TGTGGCTGATCAAGAAGAACAGCGCCTACCCCACCATCAAGCGCAGCTACAACAACACCAACCAGGAGGA
CCTGCTGGTGCTGTGGGGCATCCACCACCCCAACGACGCCGCCGAGCAGACCAAGCTGTACCAGAACCCC
ACCACCTACATCAGCGTGGGCACCAGCACCCTGAACCAGCGCCTGGTGCCCGAGATCGCCACCCGCCCCA
AGGTGAACGGGCAGAGCGGCCGCATGGAGTTCTTCTGGACCATCCTGAAGCCCAACGACGCCATCAACTT
CGAGAGCAACGGCAACTTCATCGCCCCCGAGTACGCCTACAAGATCGTGAAGAAGGGCGACAGCGCCATC
ATGAAGAGCGAGCTGGAGTACGGCAACTGCAACACCAAGTGCCAGACCCCCATGGGCGCCATCAACAGCA
GCATGCCCTTCCACAACATCCACCCCCTGACCATCGGCGAGTGCCCCAAGTACGTGAAGAGCAACCGCCT
GGTGCTGGCCACCGGCCTGCGCAACACCCCCCAGCGCGAGCGCCGCCGCAAGAAGCGCGGCCTGTTCGGC
GCCATCGCCGGCTTCATCGAGGGCGGCTGGCAGGGCATGGTGGACGGCTGGTACGGGTACCACCACAGCA
ACGAGCAGGGCAGCGGCTACGCCGCCGACAAGGAGAGCACCCAGAAGGCCATCGACGGCGTGACCAACAA
GGTGAACAGCATCATCGACAAGATGAACACCCAGTTCGAGGCCGTGGGCCGCGAGTTCAACAACCTGGAG
CGCCGCATCGAGAACCTGAACAAGCAGATGGAGGACGGCTTCCTGGACGTGTGGACCTACAACGCCGAGC
TGCTGGTGCTGATGGAGAACGAGCGCACCCTGGACTTCCACGACAGCAACGTGAAGAACCTGTACGACAA
GGTGCGCCTGCAGCTGCGCGACAACGCCAAGGAGCTGGGCAACGGCTGCTTCGAGTTCTACCACAAGTGC
GACAACGAGTGCATGGAGAGCGTGAAGAACGGCACCTACGACTACCCCCAGTACAGCGAGGAGGCCCGCC
TGAACCGCGAGGAGATCAGCGGCGTGAAGCTGGAGAGCATGGGCACCTACCAGATCCTGAGCATCTACAG
CACCGTGGCCAGCAGCCTGGCCCTGGCCATCATGGTGGCCGGCCTGAGCCTGTGGATGTGCAGCAACGGC
AGCCTGCAGTGCCGCATCTGCATCTAA

Protein Information

Protein Name

codon-optimized hemagglutinin

NCBI Protein GI

89994010

Protein Accession

ABD83813.1

Protein pI

6.56

Protein Weight

61265.95

Protein Length

642

Protein Note

derived from influenza A virus strain A/goose/Guangdong/1/96(H5N1); GSGD96

Protein Sequence

>ABD83813.1 codon-optimized hemagglutinin [synthetic construct]
MEKIVLLLAIVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLNGVKPLILRD
CSVAGWLLGNPMCDEFINVPEWSYIVEKASPANDLCYPGDFNDYEELKHLLSRTNHFEKIQIIPKSSWSN
HDASSGVSSACPYHGRSSFFRNVVWLIKKNSAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNP
TTYISVGTSTLNQRLVPEIATRPKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSAI
MKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNTPQRERRRKKRGLFG
AIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLE
RRIENLNKQMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKC
DNECMESVKNGTYDYPQYSEEARLNREEISGVKLESMGTYQILSIYSTVASSLALAIMVAGLSLWMCSNG
SLQCRICI

Epitope Information

IEDB Linear Epitope