VIOLIN: Vaccine Investigation and Online Information Network

HA

General Information

Protegen ID

1831

Taxonomy ID

380342

Other Database IDs

CDD:278910
GOA:Q67089
HSSP: 1JSD
InterPro: IPR000149
InterPro: IPR001364
InterPro: IPR008980
InterPro: IPR013827
InterPro: IPR013828
UniProtKB/TrEMBL: Q67089

Molecule Role

Protective antigen

Related Vaccines(s)

PrV-HA (swine-origin H1N1)

References

Gene Information

Gene Name

NCBI Nucleotide GI

516372

DNA Sequence

>gi|516372|emb|X57492.1| Influenza A virus (A/swine/Iowa/15/30(H1N1)) HA1 and HA2 genes for haemagglutinin, genomic RNA
ATGAAGGCAAGACTATTAGTCTTGTTATGTGCATTTGCATCTACAAATGCAGACACACTATGTATAGGTT
ACCATGCAAATAACTCAACCGACACTGTTGACACAGTACTCGAGAAGAATGTAACCGTGACACACTCTGT
TAACCTGCTTGAAGACAGCCACAACGGAAAACTATGTAGACTGGGAGGAATAGCCCCATTACAACTGGGG
AAATGTAATATTGCCGGATGGCTCTTGGGAAACCCAGAATGCGATTTGCTGCTCACAGTGAGCTCATGGT
CCTATATTGTAGAAACACGGACCTCAGATAATGGGACATGTTACCCAGGAGATTTCATCGACTATGAAGA
ACTGAGAGAGCAACTGAACTCAATGTCATCATTCGAAAAATTCGAGATATTTCCCAAGACAAGCTCGTGG
CCCAATCATGAAACAACCAAAGGTGTAACGGCAGCATGCCCCTATGCTGGAGCAAGCAGCTTTTACAGAA
ACTTACTATGGCTGGTAAAGAAGGAAAATTCATACCCAAAGCTTAGCAAATCCTATGTTAACAATAAAGG
AAAAGAAGTCCTTGTGCTATGGGGTGTTCATCATCCGCCTACCAGTACTGATCAACAAAGTCTCTATCAA
AATGCAGATGCTTATGTTTCTGTAGGGTCATCAAAATATTACAGGAGGTTCACTCCAGAAATAGCAGCGA
GACCCAAAGTGAGAGGTCAGGCAGGGAGGATGAACTATTACTGGACATTACTAGAACCCGGAGACACAAT
AACATTTGAGGCAACTGGAAATTTAGTGGCACCAAGATATGCTTTCGCACTGAATAGAGGTTCTGGATCC
GGTATCATCACTTCAAACGCACCAGTGCATGATTGTGACACGAAGTGTCAAACACCTCATGGTGCCATAA
ACAGCAGTCTCCCTTTCCAGAATGTACATCCAGTCACAATAGGAGAGTGCCCAAAATACGTCAAGAGCAC
CAAATTAAGGATGGTTACAGGACTAAGAAACATCCCATCTATCCAGTCTAGAGGTCTGTTTGGAGCCATT
GCCGGTTTTATTGAGGGGGGATGGACTGGATTGATAGATGGATGGTATGGTTACCATCATCAGAATGGAC
AGGGATCAGGCTATGCAGCGGACCAAAAGAGCACACAAAATGCCATTGACGGGATTACTAACAAGGTGAA
TTCTGTTATCGAGAAGATGAACACGCAATTCACAGCAGTGGGTAAAGAATTCAACAACCTAGAAAGAAGG
ATAGAAAATTTAAATAAAAAAGTCGATGATGGATTTCTGGATATTTGGACATATAATGCAGAACTGTTAG
TTCTATTGGAAAATGAGAGGACTCTGGATTTCCATGACTCAAATGTAAAGAACCTGTATGAGAAAGTAAG
AAGCCAACTAAGGAATAATGCCAAGGAAATCGGGAATGGATGCTTTGAATTCTACCACAAATGTGATGAT
ACATGCATGGAAAGCGTCAGAAATGGGACTTATGATTACCCAAAGTATTCAGAAGAATCAAAATTGAACA
GAGAAGAAATAGATGGAGTGAAATTGGAATCAATGATGGTCTATCAGATTCTGGCGATCTATTCAACCGT
CGCCAGTTCACTAGTGCTGTTAGTCTCCCTGGGGGGAATCAGCTTCTGGATGTGTTCTAATGGGTCTTTG
CAGTGCAGAATATGTATTTAA

Protein Information

Protein Name

haemagglutinin

NCBI Protein GI

516373

Protein Accession

CAA40729.1

Protein pI

8.2

Protein Weight

37805.44

Protein Length

449

Protein Note

Haemagglutinin; pfam00509

Protein Sequence

>CAA40729.1 haemagglutinin, partial [Influenza A virus (A/swine/Iowa/15/1930(H1N1))]
MKARLLVLLCAFASTNADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLGGIAPLQLG
KCNIAGWLLGNPECDLLLTVSSWSYIVETRTSDNGTCYPGDFIDYEELREQLNSMSSFEKFEIFPKTSSW
PNHETTKGVTAACPYAGASSFYRNLLWLVKKENSYPKLSKSYVNNKGKEVLVLWGVHHPPTSTDQQSLYQ
NADAYVSVGSSKYYRRFTPEIAARPKVRGQAGRMNYYWTLLEPGDTITFEATGNLVAPRYAFALNRGSGS
GIITSNAPVHDCDTKCQTPHGAINSSLPFQNVHPVTIGECPKYVKSTKLRMVTGLRNIPSIQSRGLFGAI
AGFIEGG

Vaxign Prediction

Localization(Probability)

(Prob.=0)

Adhesin Probability

0.718

Trans-membrane Helices

Detailed Vaxign Results

Vaxign Results

Epitope Information

IEDB Linear Epitope