VIOLIN: Vaccine Investigation and Online Information Network

cssA

General Information

Protegen ID

3971

Sequence Strain (Species/Organism)

Escherichia coli

Taxonomy ID

562

Other Database IDs

CDD:293436

Molecule Role

Protective antigen

Molecule Role Annotation

(Zeinalzadeh et al., 2017)

References

Zeinalzadeh et al., 2017: Zeinalzadeh N, Salmanian AH, Goujani G, Amani J, Ahangari G, Akhavian A, Jafari M. A Chimeric protein of CFA/I, CS6 subunits and LTB/STa toxoid protects immunized mice against enterotoxigenic Escherichia coli. Microbiology and immunology. 2017; 61(7); 272-279. [PubMed: 28543534].

Gene Information

Gene Name

cssA

NCBI Gene ID

16833872

Genbank Accession

AB702969

Locus Tag

D616_p104124

Plasmid No

pCss165Kan

Gene Starting Position

94109

Gene Ending Position

94573

DNA Sequence

>NC_022333.1:94109-94573 Escherichia coli plasmid pCss165Kan DNA, complete genome, strain: 4266 delta cssB::Km
TTTAGTTTACATAGTAACCAACCATAACCTGATCGTTATATATCCCAGGAGGTATTTCTTTATCTCCGCT
AGTATAATTCAGCGCTCTAAAAGTTATTTGTTGATTAGGCGTAACCTCTGCACCATGATCTTTTAACATT
TTTCTCCCTTTATCATCAACAATCTGGTAGATTATTGATTGGGAATCATCAGCGGTATTTACGAGTCGTC
CTAACCCATAATCTTCATCATAAACAGGGTAGACCGTTACCTGGGATACATTTTCAGGAACAGTTAAGCT
CACACTAAATAATAAACCTCCTTCCTTTCCAACATTTTTACCAAAAGAAGGCTGGATTTGTGGTTCAGGC
GCAAAAAAACTTTTTGAAATAGTCGTTGATACTGGGAAGTTTTTAGTCGCTATTTCTGTTCTGGCATGGC
TGCCGAATGAAGCAAGAATTAGAATTAAACCAATTGTTTTCTTCA

Protein Information

Protein Name

CS6 structural subunit A

NCBI Protein GI

543130020

Protein Accession

YP_008531445

Protein pI

5.74

Protein Weight

15564.38

Protein Length

154

Protein Note

CS6 fimbrial subunits A and B, Coli surface antigen 6; pfam16831

Protein Sequence

>YP_008531445.1 CS6 structural subunit A (plasmid) [Escherichia coli]
MKKTIGLILILASFGSHARTEIATKNFPVSTTISKSFFAPEPQIQPSFGKNVGKEGGLLFSVSLTVPENV
SQVTVYPVYDEDYGLGRLVNTADDSQSIIYQIVDDKGRKMLKDHGAEVTPNQQITFRALNYTSGDKEIPP
GIYNDQVMVGYYVN

Epitope Information

IEDB Linear Epitope