VP5 protein
General Information
Protegen ID
4271
Sequence Strain (Species/Organism)
Rotavirus
Taxonomy ID
10941
Other Database IDs
CDD:144538IPR002148 Q88301
Molecule Role
Protective antigen
Molecule Role Annotation
(Afchangi et al. , 2018 )
References
Afchangi et al. , 2018: Afchangi A, Arashkia A, Shahosseini Z, Jalilvand S, Marashi SM, Roohvand F, Mohajel N, Shoja Z. Immunization of Mice by Rotavirus NSP4-VP6 Fusion Protein Elicited Stronger Responses Compared to VP6 Alone. Viral immunology . 2018; 31(3); 233-241. [PubMed: 29185875 ].
Gene Information
Gene Name
VP5 protein
Protein Information
Protein Name
VP5 protein
NCBI Protein GI
CAA78091
Protein pI
7.99
Protein Weight
54143.27
Protein Length
538
Protein Note
Rotavirus RNA-binding Protein 53 (NS53); pfam00981
Protein Sequence
>CAA78091.1 VP5 protein [Human rotavirus A]
MATFKDACYYYKRINKLNHAVLKLGVNSTWRPSPPTKYKGWCLDCCQHTDLTYCRGCTMYHVCQWCSQYG
RCFLDDEPHLLRMRTFKNEITKDDLKNLIDMYITLFPMNQKIVCKFINNRNNTNVEMNDMTQWYNHLLMP
ISLQSLSIELDGDVYYVFGYYDNMNSVNQTPFSFTNLIDVYDKLLLDDVNFVRMSFLPTSLQQEYAIRYF
SKSRFISEQRKCVNDSHFSINVLENLHNPSFKVQITRNCSELLLGWNEACKLVKNVSAYFDMLKTSCVEF
YSVSTRCRIFTQHKLKMASKLIKPNYITSNHRTSATEVHNCKLCSVNNNYTVWNDFRVKKIYDNIFSFLR
ALVKSNVNIGHCSSQEKIYEYVEDVLNVCDNEKWKTSIMKVFNCLEPVELDDVKYVLFNHEINWDVINVL
VQSIGKVPQILTLKNVITIIQSIIYEWFDIRYMRNTPMVTFTIDKLRRLHTELKTAEYDSGISDVE
Epitope Information
IEDB Linear Epitope
-- Assay Type --
T Cell Epitope
B Cell Epitope
IEDB ID
Epitope
MHC restriction
Starting position
Ending position
IEDB ID
Epitope
Starting position
Ending position
MATFKDACYYYKRINKLNHAVLKLGVNSTWRPSPPTKYKGWCLDCCQHTDLTYCRGCTMYHVCQWCSQYGRCFLDDEPHLLRMRTFKNEITKDDLKNLIDMYITLFPMNQKIVCKFINNRNNTNVEMNDMTQWYNHLLMPISLQSLSIELDGDVYYVFGYYDNMNSVNQTPFSFTNLIDVYDKLLLDDVNFVRMSFLPTSLQQEYAIRYFSKSRFISEQRKCVNDSHFSINVLENLHNPSFKVQITRNCSELLLGWNEACKLVKNVSAYFDMLKTSCVEFYSVSTRCRIFTQHKLKMASKLIKPNYITSNHRTSATEVHNCKLCSVNNNYTVWNDFRVKKIYDNIFSFLRALVKSNVNIGHCSSQEKIYEYVEDVLNVCDNEKWKTSIMKVFNCLEPVELDDVKYVLFNHEINWDVINVLVQSIGKVPQILTLKNVITIIQSIIYEWFDIRYMRNTPMVTFTIDKLRRLHTELKTAEYDSGISDVE
